View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12044_low_4 (Length: 480)
Name: NF12044_low_4
Description: NF12044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12044_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Complemental strand, 564768 - 564318
Alignment:
| Q |
19 |
cttcatcctaacaagtttcacatcaccttaatcattccagtactagattcactttccaatgcttccaaatccattattgcttctctttcttctctcaatg |
118 |
Q |
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| T |
564768 |
cttcatcctaacaagtttcacatcaccttaatcattccagtactagattcactttccaatgcttccaaatccattattgcttctctttcttctctcaatg |
564669 |
T |
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| Q |
119 |
tagataccattgttcttccaccaatcaacttgccaccacaaactgtccctacactcaaacttcctctttcaatgtctctaactatgccatctatcattga |
218 |
Q |
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| T |
564668 |
tagataccattgttcttccaccaatcaacttgccaccacaaactgtccctacactcaaacttcctctttcaatgtctctaactatgccatatatcattga |
564569 |
T |
|
| Q |
219 |
tgcattgaaaacaaaaacatcaaaactagttgctataatagctgattattttgcctatgaagtgttctcatttgccaagaaactcaacattttatcatat |
318 |
Q |
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| T |
564568 |
tgcattgaaaacaaaaacatcaaaactagttgctataatagctgattattttgcctatgaagtgttctcatttgccaagaaactcaacattttatcatat |
564469 |
T |
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| Q |
319 |
acatattttccttcatcagccacagtgctatcactttgttttcattcaaaagttctagatgaaacaatttctggtgagtttaaagacttgcaagaaccaa |
418 |
Q |
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| T |
564468 |
acatattttccttcatcagccacagtattatcactttgttttcattcaaaagttctagatgaaacaatttctggtgagtttaaagacttgcaagaaccaa |
564369 |
T |
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| Q |
419 |
tcaaaatcccaggttgtgtaccgattcaaggaaccgatcttccatcttcat |
469 |
Q |
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| T |
564368 |
tcaaaatcccaggttgtgtaccgattcaaggaaccgatcttccatcttcat |
564318 |
T |
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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 874093 - 874024
Alignment:
| Q |
360 |
tcattcaaaagttctagatgaaacaatttctggtgagtttaaagacttgcaagaaccaatcaaaatccca |
429 |
Q |
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| T |
874093 |
tcatttaaaagttctagataaaataatttctggtgaatttaaagacttgcaagaaccaatcataatccca |
874024 |
T |
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