View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12044_low_8 (Length: 410)
Name: NF12044_low_8
Description: NF12044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12044_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 8530309 - 8530389
Alignment:
| Q |
242 |
gagaaatgcttaatcccacgagagtgatttctaagaaatcaacgaatgacgtgggtaacctcaataattgcataaagtcta |
322 |
Q |
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| T |
8530309 |
gagaaatgcttaatcccacgagagtgatttctaagaaatcaacgaatgacttgggtaacctcaataattgcataaagtcta |
8530389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 8530413 - 8530449
Alignment:
| Q |
348 |
aaataaaaataaaaattggttaccaaattagaaccct |
384 |
Q |
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| T |
8530413 |
aaataaaaataaaaattggttaccaaattaaaaccct |
8530449 |
T |
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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 14092312 - 14092367
Alignment:
| Q |
99 |
ttagcagtaatcacaataatgattagcgtaatccgatatcacctatgagagccata |
154 |
Q |
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| T |
14092312 |
ttagcagtaatcacaataatgattagcgtaatccgatatcacctatgagaaccata |
14092367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 14092406 - 14092447
Alignment:
| Q |
150 |
ccataaaatgctaaagcacacatatcgagtaagtatctgcatgc |
193 |
Q |
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| T |
14092406 |
ccataaaatgctaaagcaca--tatcgagtaagtatctgcatgc |
14092447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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