View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12045_high_10 (Length: 387)
Name: NF12045_high_10
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12045_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 53475131 - 53474929
Alignment:
| Q |
11 |
cagagaagtacatggcttaagaaaattcaacctcaagaaggcaatgccatagaccaacattaaccaaaagactatctaaccaaacaaagagagggttt-- |
108 |
Q |
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| T |
53475131 |
cagagaagtaaatggcttaagaaaattcaacctcaagaaggcaatgccatagaccaacattaaccaaaagactatctaaccaaacaaagagagggtttta |
53475032 |
T |
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| Q |
109 |
--tactacccccactcgtagaaagttcaaggagacccataagacttacccgaaaaccattttcaaagatagaaactaacgcgatccactgattgctcaaa |
206 |
Q |
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| T |
53475031 |
cgtactacccccactcgtagaaagttcaaggagacccataagacttactcgaaaaccattttcaaagattgaaactaacgcgatccactaattgctcaaa |
53474932 |
T |
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| Q |
207 |
att |
209 |
Q |
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||| |
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| T |
53474931 |
att |
53474929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 53474929 - 53474853
Alignment:
| Q |
247 |
ttgagatcaaccaaccactctacaaaataccaaaccaaagccaacaaaatcatgagttgagagccacttcaaaaggt |
323 |
Q |
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| T |
53474929 |
ttgagatcaaccaaccactctacaaaataccaaaccaaagccaacaaaatcatgaattgagagccacttcaaaaggt |
53474853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 368
Target Start/End: Complemental strand, 53474847 - 53474819
Alignment:
| Q |
340 |
aaactgaataagttagacgacataatctg |
368 |
Q |
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| T |
53474847 |
aaactgaataagttagacgacataatctg |
53474819 |
T |
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