View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12045_high_11 (Length: 377)
Name: NF12045_high_11
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12045_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 24726433 - 24726785
Alignment:
| Q |
19 |
ataaggttgttggttgagtacttgaatctatcaatatcatcccagtcttggtatatgaaagagtgttcccaagaaatggaattgagtttcataatcttaa |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24726433 |
ataaggttgttggttaagtacttgaatctatcaatatcataccagccttggtatatgaaagagtgttcccaagaaatggaattgagtttcataatcttaa |
24726532 |
T |
|
| Q |
119 |
agtgttgatatactacagaaattttcctgcatttttgaaatttagtagtacgttgtattaattatcgtatgggacttagcatgtaaaaatgcctctccat |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24726533 |
agtgttgatatactatagaaattttcctgcatttt-gaaatttagtattacgttgtattaattatcgtatgggacttagcatgtaaaaatgcctctccat |
24726631 |
T |
|
| Q |
219 |
tcaatccatcgcaagtcaattattaatggtgatatgcatgactgcaaaatgcctgacaaacatgttgtaaatgttccaa----tataaaatacgcattca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24726632 |
tcaatccatcgcaagtcaattattaatggtgatatacgtgactgcaaaatgcctgacaaacatgttgtaaatgttccaatatttataaaatacgcattca |
24726731 |
T |
|
| Q |
315 |
aaggggacttagcatgtaaatgtttcctgcacagtttttgtttgattctctgct |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24726732 |
aaggggacttagcatgtaaatgtttcctgcacagtttttgtttgattctttgct |
24726785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 24888536 - 24888402
Alignment:
| Q |
19 |
ataaggttgttggttgagtacttgaatctatcaatatcatcccagtcttggtatatgaaagagtgttcccaagaaatggaattgagtttcataatctt-a |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| | |
|
|
| T |
24888536 |
ataagcttgttggttgagtacttgaatctatcaatatcatcccagccttggtatatgaaagagt-ttcccaataaatggaattgagtttcataatcttaa |
24888438 |
T |
|
| Q |
118 |
aagtgttgatatactacagaaattttcctgcatttt |
153 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24888437 |
aagtgttgatatactatagaaattttcctgcatttt |
24888402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 206 - 315
Target Start/End: Complemental strand, 24888397 - 24888290
Alignment:
| Q |
206 |
aatgcctctccattcaatccatcgcaagtcaattattaatggtgatatgcatgactgcaaaatgcctgacaaacatgttgtaaatgttccaatata--aa |
303 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||| || |
|
|
| T |
24888397 |
aatgcctctccatccaatccattgcaaatcaattattaccagtgat----atgactgcaaaatgcctcacaaagatgttgtaaatgttccaatatatgaa |
24888302 |
T |
|
| Q |
304 |
atacgcattcaa |
315 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24888301 |
atacgcattcaa |
24888290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University