View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12045_high_12 (Length: 353)

Name: NF12045_high_12
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12045_high_12
NF12045_high_12
[»] chr7 (16 HSPs)
chr7 (152-337)||(15514004-15514189)
chr7 (167-307)||(15451490-15451630)
chr7 (152-279)||(15424347-15424474)
chr7 (16-158)||(15424255-15424396)
chr7 (207-337)||(15857883-15858010)
chr7 (196-293)||(15465725-15465822)
chr7 (16-158)||(15513907-15514053)
chr7 (16-147)||(15481997-15482127)
chr7 (186-272)||(15426463-15426549)
chr7 (16-158)||(15451596-15451737)
chr7 (18-74)||(18373332-18373388)
chr7 (18-68)||(15426382-15426432)
chr7 (16-79)||(15465868-15465928)
chr7 (19-68)||(15858051-15858100)
chr7 (16-79)||(15533742-15533805)
chr7 (95-127)||(15465821-15465853)
[»] scaffold0957 (2 HSPs)
scaffold0957 (16-158)||(444-585)
scaffold0957 (152-209)||(436-493)
[»] scaffold1195 (2 HSPs)
scaffold1195 (16-84)||(354-422)
scaffold1195 (98-126)||(437-465)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 152 - 337
Target Start/End: Original strand, 15514004 - 15514189
Alignment:
Q  152 ataggattattctcccttatagcattcctatatctttggaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaattaaaggtg 251  Q
    ||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15514004 ataggattactctcccttatagcatccctatacctttgaaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaagtaaaggtg 15514103  T
Q  252 ttggtagtattggtatattttaccatgtctattcaaatttataattccctcatttaatatttttagtttccctttagggtcctttt 337  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  15514104 ttggtagtattagtatattttaccatgtctattcaaatttataattccctcgtttaatatttttagtttcccttttgggtcttttt 15514189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 167 - 307
Target Start/End: Complemental strand, 15451630 - 15451490
Alignment:
Q  167 cttatagcattcctatatctttggaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaattaaaggtgttggtagtattggta 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  15451630 cttatagcattcctatatctttggaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaataaaaggtgttggtagtattagta 15451531  T
Q  267 tattttaccatgtctattcaaatttataattccctcattta 307  Q
    |||||||||| ||| ||||||||||||||||||||||||||    
T  15451530 tattttaccacgtcaattcaaatttataattccctcattta 15451490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 15424347 - 15424474
Alignment:
Q  152 ataggattattctcccttatagcattcctatatctttggaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaattaaaggtg 251  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15424347 ataggattactctcccttatagcatccctatacctttggaaccatgggatcgacacctaaacaataatgctattgttaggtccctttccaattaaaggtg 15424446  T
Q  252 ttggtagtattggtatattttaccatgt 279  Q
    ||||||||||| ||||||||||||||||    
T  15424447 ttggtagtattagtatattttaccatgt 15424474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 15424255 - 15424396
Alignment:
Q  16 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagtgatgaacnnnnnnnnatcttttgggagcaataggat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||          |||||||||||||||||||||    
T  15424255 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttggaaaccaagttatgat-attttattatcttttgggagcaataggat 15424353  T
Q  116 tactctcccttatagcatccctatacctttggaaccataggat 158  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  15424354 tactctcccttatagcatccctatacctttggaaccatgggat 15424396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 207 - 337
Target Start/End: Complemental strand, 15858010 - 15857883
Alignment:
Q  207 cctaaacaataatgttattgttaggtccctttccaattaaaggtgttggtagtattggtatattttaccatgtctattcaaatttataattccctcattt 306  Q
    |||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||| |||    
T  15858010 cctatacaataatattattgttaggtccctttccaatcaaaggtgttggtatta---gtatattttaccatgtctattcaaatttataattccctcgttt 15857914  T
Q  307 aatatttttagtttccctttagggtcctttt 337  Q
    |||||||||||||| ||||||||||| ||||    
T  15857913 aatatttttagttttcctttagggtcttttt 15857883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 196 - 293
Target Start/End: Complemental strand, 15465822 - 15465725
Alignment:
Q  196 taggatcgacacctaaacaataatgttattgttaggtccctttccaattaaaggtgttggtagtattggtatattttaccatgtctattcaaatttat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||| ||||||| ||| ||||||||||||    
T  15465822 taggatcgacacctaaacaataatgttattgttaggtccctttcggataaaaggtgttggtagtattggtatagtttaccacgtcaattcaaatttat 15465725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 15513907 - 15514053
Alignment:
Q  16 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagtgatgaacnnnnnnnn----atcttttgggagcaata 111  Q
    |||| ||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |||| ||||              |||||||||||||||||    
T  15513907 tcgacactttggtaacattcatgtgtttgaatttgattttagattggaatcttggaaaccaagttatgactatttttttttttatcttttgggagcaata 15514006  T
Q  112 ggattactctcccttatagcatccctatacctttggaaccataggat 158  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  15514007 ggattactctcccttatagcatccctatacctttgaaaccataggat 15514053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 15482127 - 15481997
Alignment:
Q  16 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagtgatgaacnnnnnnnnatcttttgggagcaataggat 115  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||| | ||||  | |||        |||||||||||||||||||||    
T  15482127 tcgaaactttggtaatattcatgtgtttgaatttgattttagagtggaatcttggaagccaagttgt-aacttttttttatcttttgggagcaataggat 15482029  T
Q  116 tactctcccttatagcatccctatacctttgg 147  Q
    ||||||||||||||| ||||||||||||||||    
T  15482028 tactctcccttatagtatccctatacctttgg 15481997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 186 - 272
Target Start/End: Original strand, 15426463 - 15426549
Alignment:
Q  186 tttggaaccataggatcgacacctaaacaataatgttattgttaggtccctttccaattaaaggtgttggtagtattggtatatttt 272  Q
    ||||| |||||||||||| |||||||||||||||| ||||  |||||||||||||||| |||||||||||||||||| |||||||||    
T  15426463 tttgggaccataggatcgtcacctaaacaataatgatatttctaggtccctttccaataaaaggtgttggtagtattagtatatttt 15426549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 15451737 - 15451596
Alignment:
Q  16 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagtgatgaacnnnnnnnnatcttttgggagcaataggat 115  Q
    ||||||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||| || |  ||| |        ||||||||||||||||||||     
T  15451737 tcgaaactttgataacattcatgtgtttgaatttgattttagattggaatcttggaaaccaaattgtga-cctttttttatcttttgggagcaataggag 15451639  T
Q  116 tactctcccttatagcatccctatacctttggaaccataggat 158  Q
    ||||||  |||||||||| |||||| |||||||||||||||||    
T  15451638 tactctatcttatagcattcctatatctttggaaccataggat 15451596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 18373332 - 18373388
Alignment:
Q  18 gaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaac 74  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  18373332 gaaactttggtaacattcatgtgttcgaatttgattttagactggaatctttgaaac 18373388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 15426382 - 15426432
Alignment:
Q  18 gaaactttggtaacattcatgtgtttaaatttgattttagactggaatctt 68  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  15426382 gaaactttggtaacattcatgtgtttgaatttgattttagagtggaatctt 15426432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 15465928 - 15465868
Alignment:
Q  16 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagt 79  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||||||| ||||| ||||    
T  15465928 tcgaaactttggtaacattcatgtgttt---gttgattttagactggaatcttggaaaccaagt 15465868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 15858100 - 15858051
Alignment:
Q  19 aaactttggtaacattcatgtgtttaaatttgattttagactggaatctt 68  Q
    |||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  15858100 aaactttgataacattcatgtgtttgaatttgattttagagtggaatctt 15858051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 15533742 - 15533805
Alignment:
Q  16 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagt 79  Q
    ||||||||||| |||| ||||||| ||| ||||| |||||||| ||||||||| ||||| ||||    
T  15533742 tcgaaactttgataactttcatgtatttgaatttaattttagattggaatcttggaaaccaagt 15533805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 15465853 - 15465821
Alignment:
Q  95 atcttttgggagcaataggattactctccctta 127  Q
    ||||||||||| |||||||||||||||||||||    
T  15465853 atcttttgggatcaataggattactctccctta 15465821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 585 - 444
Alignment:
Q  16 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagtgatgaacnnnnnnnnatcttttgggagcaataggat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| |||| |        |||||||||||||||||||||    
T  585 tcgaaactttggtaacattcatgtgtttaaatttgattttagattggaatcttggaaacgaagttatga-catttttttatcttttgggagcaataggat 487  T
Q  116 tactctcccttatagcatccctatacctttggaaccataggat 158  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  486 tactctcccttatagcatccctatacctttggaaccataggat 444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 493 - 436
Alignment:
Q  152 ataggattattctcccttatagcattcctatatctttggaaccataggatcgacacct 209  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |||||    
T  493 ataggattactctcccttatagcatccctatacctttggaaccataggatcgtcacct 436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1195 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 354 - 422
Alignment:
Q  16 tcgaaactttggtaacattcatgtgtttaaatttgattttagactggaatcttagaaactaagtgatga 84  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |||| ||||    
T  354 tcgaaactttggtaacattcatgtgtttgaatttgattttagagtggaatcttggaaaccaagttatga 422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1195; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 437 - 465
Alignment:
Q  98 ttttgggagcaataggattactctccctt 126  Q
    |||||||||||||||||||||||||||||    
T  437 ttttgggagcaataggattactctccctt 465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University