View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12045_high_16 (Length: 275)
Name: NF12045_high_16
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12045_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 24726781 - 24727013
Alignment:
| Q |
1 |
ttgctctccatttacttcataatgatgtttgtcgggtttaaatttttgttaagatgaaacctccaaaaattctacattacaatgctacatttaatttgtt |
100 |
Q |
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| T |
24726781 |
ttgctctcctgttacttcataatgatgtttgtcgggtttaaatttttgttaagatgaaacctccaaaaattctacattacaatgctacatttaatttgtt |
24726880 |
T |
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| Q |
101 |
gttatttttaaagcttgtgcttaaaatggtaagtttacgagctcttataagtgaaccaccttaggttgcatatacacatttgacctccacaccaaaatgt |
200 |
Q |
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| T |
24726881 |
gttatttttaaagcttgtgcttaaaatggtaagtttatgagctcttataagtgaaccaccttaggttgcatacacacatttgacctccacaccaaaatgt |
24726980 |
T |
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| Q |
201 |
gacatgtgacctccttgtacaatgtaaatccat |
233 |
Q |
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|||| ||||||||||||||| ||| ||||||| |
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| T |
24726981 |
gacacgtgacctccttgtaccgtgtgaatccat |
24727013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 11778273 - 11778214
Alignment:
| Q |
139 |
gagctcttataagtgaaccaccttaggttgcatatacacatttgacctccacaccaaaatg |
199 |
Q |
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| T |
11778273 |
gagcacttataggtgaaccaccttaggtggta-acacacatttgacctccacaccaaaatg |
11778214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 4381615 - 4381568
Alignment:
| Q |
139 |
gagctcttataagtgaaccaccttaggttgcatatacacatttgacct |
186 |
Q |
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| T |
4381615 |
gagctcttataggtgaaccaccttaagtggcatacacacatttgacct |
4381568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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