View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12045_high_18 (Length: 245)

Name: NF12045_high_18
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12045_high_18
NF12045_high_18
[»] chr6 (6 HSPs)
chr6 (161-245)||(11165352-11165436)
chr6 (124-245)||(11208364-11208485)
chr6 (124-245)||(11274926-11275047)
chr6 (124-243)||(11169542-11169661)
chr6 (186-245)||(11155325-11155384)
chr6 (186-245)||(11195772-11195831)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 11165352 - 11165436
Alignment:
Q  161 ttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagc 245  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11165352 ttgttctgcaaccttattatcttcaagccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagc 11165436  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 11208364 - 11208485
Alignment:
Q  124 cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt 223  Q
    |||||||||| ||| | |||||| | ||||| || ||||||||| |  |||||||| | ||||||||| | ||||||||||||||||| |||||||| ||    
T  11208364 cacttgaaagaatgctcctataacactcaaaatcttgttgttctactaccttattagcgtcaagccacatgaagaccaaatcaactgcgttattgatctt 11208463  T
Q  224 ttccttttcttttgacgaaagc 245  Q
    ||||||||||||||||||||||    
T  11208464 ttccttttcttttgacgaaagc 11208485  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 11274926 - 11275047
Alignment:
Q  124 cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt 223  Q
    |||||||||| ||| | |||||| ||||||| || |||||||||||| ||  |||| | ||||||||||||||||||||||||  ||| |||||||| ||    
T  11274926 cacttgaaagaatgctcctataacattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcattattgatgtt 11275025  T
Q  224 ttccttttcttttgacgaaagc 245  Q
    ||||||||||||| | ||||||    
T  11275026 ttccttttcttttaatgaaagc 11275047  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 11169542 - 11169661
Alignment:
Q  124 cacttgaaagcatgttgctataaaattcaaattcgtgttgttctgcagccttattatcttcaagccacttaaagaccaaatcaactgccttattgatatt 223  Q
    |||||||||| ||| | ||||||  |||||| || |||||||||||| ||  |||| | ||||||||||||||||||||||||  ||| |||||||| ||    
T  11169542 cacttgaaagaatgctactataatgttcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatgtt 11169641  T
Q  224 ttccttttcttttgacgaaa 243  Q
    | ||||||||||||||||||    
T  11169642 tgccttttcttttgacgaaa 11169661  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 11155325 - 11155384
Alignment:
Q  186 agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagc 245  Q
    |||||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  11155325 agccacgtaaagaccaaatcaagtgcattattgatcttttccttttcttttgacgaaagc 11155384  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 11195772 - 11195831
Alignment:
Q  186 agccacttaaagaccaaatcaactgccttattgatattttccttttcttttgacgaaagc 245  Q
    |||||| | ||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  11195772 agccacatgaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagc 11195831  T

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