View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12045_high_2 (Length: 612)

Name: NF12045_high_2
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12045_high_2
NF12045_high_2
[»] chr2 (5 HSPs)
chr2 (19-222)||(10973998-10974201)
chr2 (533-605)||(10973705-10973777)
chr2 (533-594)||(2973587-2973648)
chr2 (533-606)||(14230934-14231007)
chr2 (533-587)||(17826658-17826712)
[»] chr1 (6 HSPs)
chr1 (346-435)||(47063063-47063148)
chr1 (311-376)||(47026785-47026850)
chr1 (329-381)||(47030738-47030790)
chr1 (346-390)||(47061535-47061579)
chr1 (533-605)||(47726169-47726241)
chr1 (533-605)||(47747475-47747547)
[»] chr4 (6 HSPs)
chr4 (544-606)||(27066502-27066564)
chr4 (533-600)||(54027864-54027931)
chr4 (533-599)||(12355135-12355201)
chr4 (544-606)||(27066696-27066758)
chr4 (544-606)||(27066890-27066952)
chr4 (544-606)||(27087603-27087665)
[»] chr6 (1 HSPs)
chr6 (533-606)||(30141094-30141167)
[»] chr8 (1 HSPs)
chr8 (550-605)||(10601022-10601077)
[»] chr5 (1 HSPs)
chr5 (544-600)||(5335371-5335427)
[»] scaffold1964 (1 HSPs)
scaffold1964 (533-605)||(1023-1095)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 10974201 - 10973998
Alignment:
Q  19 atataaaaccaaaagcaataaaacggagagttagaaattgaaaatggaaatacaagacgaaagtgaaagggaaacgtgatgatatagaaacgaagttgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10974201 atataaaaccaaaagcaataaaacggagagttagaaattgaaaatggaaatacaagacgaaagtgaaagggaaacgtgatgatatagaaacgaagttgat 10974102  T
Q  119 aattctagaatttataaaaacttaaacttaggtttgaggtgatggcaccaaaaagaaatggagatgaggctgtgaaaagtgggaatcaaaaatatgtccg 218  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  10974101 aattctagaatttatataaacttaaacttaggtttgaggtgatggcaccaaaaagaaatggagatgaggctgtggaaagtgggaaccaaaaatatgtccg 10974002  T
Q  219 gcac 222  Q
    ||||    
T  10974001 gcac 10973998  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 533 - 605
Target Start/End: Complemental strand, 10973777 - 10973705
Alignment:
Q  533 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10973777 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacggcttcccggtctttgct 10973705  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 594
Target Start/End: Complemental strand, 2973648 - 2973587
Alignment:
Q  533 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcc 594  Q
    |||||||||| || ||||||| |||||||||||| |||||||| |||||||||||| |||||    
T  2973648 aagatgctctttactcgggtcgggaagacataactgaatttggcaacatcatcacggcttcc 2973587  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 606
Target Start/End: Original strand, 14230934 - 14231007
Alignment:
Q  533 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 606  Q
    |||||| ||| |||||||||| |||||||||||| |||||||| |||||||||||  | ||||||||| |||||    
T  14230934 aagatggtctttattcgggtcgggaagacataaccgaatttggaaacatcatcacagcctcccggtctttgctt 14231007  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 533 - 587
Target Start/End: Original strand, 17826658 - 17826712
Alignment:
Q  533 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcac 587  Q
    |||||||||| |||||| ||| |||||| ||||| ||||||||||||||||||||    
T  17826658 aagatgctctttattcgtgtcgggaagatataaccgaatttggtaacatcatcac 17826712  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 346 - 435
Target Start/End: Original strand, 47063063 - 47063148
Alignment:
Q  346 atgtatgtaatgtttctttgcagcgatgtggaactagaaggcgttgtttctactatatatctactatccactcccaccccaaacttggca 435  Q
    ||||||| ||||||||||||||||||||||| ||||  ||||||| |||||||    |||||||| ||||||| |||||| |||||||||    
T  47063063 atgtatgaaatgtttctttgcagcgatgtgggactaccaggcgttatttctac----tatctactctccactctcacccccaacttggca 47063148  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 47026785 - 47026850
Alignment:
Q  311 tgactttgtcaaaggcacttatataagatatcttcatgtatgtaatgtttctttgcagcgatgtgg 376  Q
    ||||| ||||||||||| |||||||| | || | |||||||| ||||||| |||||||||||||||    
T  47026785 tgactctgtcaaaggcaattatataaaacatgtccatgtatgcaatgtttgtttgcagcgatgtgg 47026850  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 47030738 - 47030790
Alignment:
Q  329 ttatataagatatcttcatgtatgtaatgtttctttgcagcgatgtggaacta 381  Q
    |||||||||||||||||| ||||  |||||| ||||| |||||||||| ||||    
T  47030738 ttatataagatatcttcaagtatagaatgttactttggagcgatgtgggacta 47030790  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 47061535 - 47061579
Alignment:
Q  346 atgtatgtaatgtttctttgcagcgatgtggaactagaaggcgtt 390  Q
    ||||||| |||||||||||| |||||||||| |||| ||||||||    
T  47061535 atgtatgcaatgtttctttgaagcgatgtgggactaaaaggcgtt 47061579  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 605
Target Start/End: Original strand, 47726169 - 47726241
Alignment:
Q  533 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 605  Q
    |||| ||||| || ||| ||| |||||||||||| |||||||| |||||||||||   |||||||||| ||||    
T  47726169 aagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacatattcccggtctttgct 47726241  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 605
Target Start/End: Original strand, 47747475 - 47747547
Alignment:
Q  533 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 605  Q
    |||| ||||| || ||| ||| |||||||||||| |||||||| |||||||||||   |||||||||| ||||    
T  47747475 aagacgctctttactcgagtcgggaagacataactgaatttggcaacatcatcacatattcccggtctttgct 47747547  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 544 - 606
Target Start/End: Complemental strand, 27066564 - 27066502
Alignment:
Q  544 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 606  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||||||||||| |||||    
T  27066564 tattcgggtcgggaagacataatggaatttggaaacatcatcacaacttcccggtctttgctt 27066502  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 533 - 600
Target Start/End: Complemental strand, 54027931 - 54027864
Alignment:
Q  533 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 600  Q
    |||| ||||| | |||| ||| |||||| ||||| |||||||||||||||||||| ||||||||||||    
T  54027931 aagacgctctttgttcgagtcgggaagatataaccgaatttggtaacatcatcacaacttcccggtct 54027864  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 533 - 599
Target Start/End: Original strand, 12355135 - 12355201
Alignment:
Q  533 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtc 599  Q
    |||||| ||| |||||||||| |||||||||||| |||||||| || ||||||||  ||||||||||    
T  12355135 aagatggtctttattcgggtcgggaagacataacggaatttggaaatatcatcacagcttcccggtc 12355201  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 606
Target Start/End: Complemental strand, 27066758 - 27066696
Alignment:
Q  544 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 606  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||||| |||||    
T  27066758 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgctt 27066696  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 606
Target Start/End: Complemental strand, 27066952 - 27066890
Alignment:
Q  544 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 606  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||||| |||||    
T  27066952 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgctt 27066890  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 606
Target Start/End: Complemental strand, 27087665 - 27087603
Alignment:
Q  544 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 606  Q
    |||||||||| |||||||||||  |||||||| ||||||||||| |||| ||||||| |||||    
T  27087665 tattcgggtcgggaagacataatggaatttggaaacatcatcacaactttccggtctttgctt 27087603  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 606
Target Start/End: Complemental strand, 30141167 - 30141094
Alignment:
Q  533 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgctt 606  Q
    |||||| ||| |||||||||| |||||||||||| |||| ||| |||||||||||  ||||||||||| |||||    
T  30141167 aagatggtctttattcgggtcgggaagacataacggaatgtggaaacatcatcacagcttcccggtctttgctt 30141094  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 605
Target Start/End: Original strand, 10601022 - 10601077
Alignment:
Q  550 ggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 605  Q
    |||| |||||||||||| |||||||| |||||||||||||||| ||||||| ||||    
T  10601022 ggtcgggaagacataactgaatttggcaacatcatcacgactttccggtctttgct 10601077  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 600
Target Start/End: Complemental strand, 5335427 - 5335371
Alignment:
Q  544 tattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtct 600  Q
    |||||||||| |||||||||||| |||||||| |||||||||||  |||||| ||||    
T  5335427 tattcgggtcgggaagacataactgaatttggaaacatcatcacagcttcccagtct 5335371  T

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Target: scaffold1964 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1964
Description:

Target: scaffold1964; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 605
Target Start/End: Original strand, 1023 - 1095
Alignment:
Q  533 aagatgctctatattcgggtcaggaagacataacagaatttggtaacatcatcacgacttcccggtctctgct 605  Q
    |||| ||||| || ||||||| |||||||||||| |||||||| ||||| |||||| ||| || |||| ||||    
T  1023 aagacgctctttactcgggtcgggaagacataactgaatttggcaacattatcacggctttccagtctttgct 1095  T

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