View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12045_high_3 (Length: 564)
Name: NF12045_high_3
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12045_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 131 - 530
Target Start/End: Complemental strand, 43368657 - 43368258
Alignment:
| Q |
131 |
ggctttaaaagcaaaaatgaatagggaagtagaagaatttgcccgaagattaaattcttcccgggaagagaggataaaagacttttcttcatcatcgcaa |
230 |
Q |
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| T |
43368657 |
ggctttaaaagcaaaaatgaatagggaagtagaagaatttgcccgaagattaaattcttcccgggaagagaggataaaagacttttcttcatcatcgcaa |
43368558 |
T |
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| Q |
231 |
gaaaggaaattggcttgaacattttgacaaagaagttgttgcatgtcacttgnnnnnnnnnnnnnnnnnatccgatggaaattttaatgaggaaccttgc |
330 |
Q |
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| T |
43368557 |
gaaaggaaattggcttgaacattttgacaaagaagttgttgcatgtcacttgtttttctttctttttttatccgatggaaattttaacaaggaaccttgc |
43368458 |
T |
|
| Q |
331 |
ttgttaacggttcaaaataaagcttgtatctcatcaannnnnnnnnnnnngtatttggatgttgtgaaatttttattatctttaacaagtgtgtcgacat |
430 |
Q |
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| T |
43368457 |
ttgttaacggttcaaaataaagcttgtatctcgtcaattttttcgtttttgtatttggatgttgtgaaatttttattatctttaacaagtgtgtcgacat |
43368358 |
T |
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| Q |
431 |
cttttgttttgttgagnnnnnnnnaggttcctttttatgcacttctatcatgtagaaataaaaacaatttatgaattttttgctttcatttttagtttga |
530 |
Q |
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| T |
43368357 |
cttttgttttgttgagttttttttaggttcctttttatgcacttctatcatgtagaaataaaaacaatttatgaattttttgctttcatttttagtttga |
43368258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43368799 - 43368729
Alignment:
| Q |
1 |
acgtcggtcataacaacatcaaacaccaaagttcggaagtagataaactgtgtgagacctcaaatttacac |
71 |
Q |
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| T |
43368799 |
acgtcggtcataacaacatcaaacaccaaagttcggaagtagataaactgtgtgagacctcaaatttacac |
43368729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 129 - 282
Target Start/End: Complemental strand, 43364523 - 43364370
Alignment:
| Q |
129 |
ccggctttaaaagcaaaaatgaatagggaagtagaagaatttgcccgaagattaaattcttcccgggaagagaggataaaagacttttcttcatcatcgc |
228 |
Q |
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||||| ||| |||||| ||| |||||||||| |||||||||||||| |||||||||| |||| | ||||||| ||| ||||||||||||| ||| ||| |
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| T |
43364523 |
ccggccttacaagcaagaattgatagggaagtggaagaatttgcccgcagattaaattgttccttgcaagagagaatacaagacttttcttcgtcagcgc |
43364424 |
T |
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| Q |
229 |
aagaaaggaaattggcttgaacattttgacaaagaagttgttgcatgtcacttg |
282 |
Q |
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| T |
43364423 |
aggaaaggattttggcttgaaaattttgacaaggaaattgttgcaggtcacttg |
43364370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 43364353 - 43364295
Alignment:
| Q |
309 |
aaattttaatgaggaaccttgcttgttaacggttcaaaataaagcttgtatctcatcaa |
367 |
Q |
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| T |
43364353 |
aaattttaaggagtaacctagcttgttaagagttcaaaataaagcttgtagctcgtcaa |
43364295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 11369790 - 11369875
Alignment:
| Q |
153 |
agggaagtagaagaatttgcccgaagattaaattcttcccgggaagagaggataaaagacttttcttcatcatcgcaagaaaggaa |
238 |
Q |
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| T |
11369790 |
agggaagtggaagattttgcccgcagattaaattctgactggccagagagaataaaagactttttgtcatcctcacaagaaaggaa |
11369875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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