View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12045_low_17 (Length: 295)
Name: NF12045_low_17
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12045_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 35945 - 36210
Alignment:
| Q |
14 |
gcatgttcacagatatcaaaattgagtatgattcccgtggtttgtgttatggaaaggattcttcacaacaagcacttttcaaggaaagtgaaaatttcag |
113 |
Q |
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| T |
35945 |
gcatgttcacagatatcaaaattgagtatgattcccgtggtttgtgttatggaaaggattcttcacaacaagcacttttcaaggaaagtgaaaatttcag |
36044 |
T |
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| Q |
114 |
tggtggttgtggttattggtgttggtgtttgtaccgtaactgatgtaaaagttaacctcacaggtttcacatgtgcatgtttagcagttttctctacatc |
213 |
Q |
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| T |
36045 |
tggtggttgtggttattggtgttggtgtttgtaccgtaactgatgtaaaagttaacctcaaaggtttcacatgtgcatgtttagcagttttctctacatc |
36144 |
T |
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| Q |
214 |
tttgcaacaaattgtaagtattatgtactatttatgttttgtgctggaagtatatacgaaagtttt |
279 |
Q |
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| T |
36145 |
tttgcaacaaattgtaagtattatgtactatttatgttttgtgctggaagtatatatgaaagtttt |
36210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 8676696 - 8676538
Alignment:
| Q |
22 |
acagatatcaaaattgagtatgattcccgtggtttgtgttatggaaaggattcttcacaacaagcacttttcaaggaaagtgaaaatttcagtggtggtt |
121 |
Q |
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||||||||||||| | || |||||||| ||||||||||| |||||| |||| ||||||| ||| |||| |||||| |||||||| | || || ||||| |
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| T |
8676696 |
acagatatcaaaactaagcatgattccggtggtttgtgtgatggaatggatccttcacagcaaacactactcaagggaagtgaaagtgtcggtcatggtt |
8676597 |
T |
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| Q |
122 |
gtggttattggtgttggtgtttgtaccgtaactgatgtaaaagttaacctcacaggttt |
180 |
Q |
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| T |
8676596 |
gtggttattggtgttggtgtttgcaccgtaactgatgtaaatgttaacttcaaaggttt |
8676538 |
T |
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