View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12045_low_18 (Length: 280)

Name: NF12045_low_18
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12045_low_18
NF12045_low_18
[»] chr7 (22 HSPs)
chr7 (13-209)||(15425858-15426054)
chr7 (10-203)||(15513343-15513536)
chr7 (10-119)||(15423717-15423827)
chr7 (69-194)||(15452144-15452270)
chr7 (13-79)||(15452281-15452347)
chr7 (227-280)||(15513744-15513797)
chr7 (10-52)||(15533428-15533470)
chr7 (227-280)||(15424092-15424145)
chr7 (49-119)||(18376803-18376874)
chr7 (11-52)||(15445679-15445720)
chr7 (227-280)||(15466043-15466096)
chr7 (227-280)||(15482242-15482295)
chr7 (11-52)||(15482402-15482443)
chr7 (11-119)||(15539895-15540004)
chr7 (140-184)||(15429170-15429214)
chr7 (140-184)||(15487565-15487609)
chr7 (140-184)||(16942289-16942333)
chr7 (229-280)||(15426214-15426265)
chr7 (227-280)||(15451851-15451904)
chr7 (227-280)||(15533574-15533627)
chr7 (227-280)||(15858218-15858271)
chr7 (140-184)||(15448698-15448742)
[»] scaffold1195 (2 HSPs)
scaffold1195 (11-52)||(55-96)
scaffold1195 (227-279)||(187-239)
[»] scaffold0957 (2 HSPs)
scaffold0957 (15-52)||(857-894)
scaffold0957 (227-280)||(700-753)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 15425858 - 15426054
Alignment:
Q  13 gagagcaaggaagttacctaatgatcttatttctttctctcatcttgagttatccgaaatcaaagactggtgttttcatcattgatgatttctttcctct 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15425858 gagagcaaggaagttacctaatgctcttatttctttctctcatcttgagttatccgaaatcaaagactggtgttttcatcattgatgctttctttcctct 15425957  T
Q  113 cattctcnnnnnnnnnnnngttacttaaagttacatcttcataacgacgttttaaatgcagttacttgattgacgtttgatttttgcatccatctat 209  Q
    |||||||            ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  15425958 cattctcttttttatttttgttacttaaagttacatcttcataacgacattttaattgcagttacttgattgacgtttgatttttgcatccatctat 15426054  T

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Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 203
Target Start/End: Original strand, 15513343 - 15513536
Alignment:
Q  10 gcagagagcaaggaagttacctaatgatcttatttctttctctcatcttgagttatccgaaatcaaagac-tggtgttttcatcattgatgatttctttc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||||    
T  15513343 gcagagagcaaggaagttacctaatgatcttatttctttctctcatcttgtgttatccgaaatcaaagacttcgtgttttcatcattgatgctttctttc 15513442  T
Q  109 ctctcattctcnnnnnnnnnnnngttacttaaagttacatcttcataacgacgttttaaatgcagttacttgattgacgtttgatttttgcatcc 203  Q
    ||||||||| |             ||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||| ||||||    
T  15513443 ctctcattcgctttgttatttttattacttaaagttacatcttcacaaccacgtttt-aatgcagttgcttgattgacgtttgattttggcatcc 15513536  T

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Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 15423717 - 15423827
Alignment:
Q  10 gcagagagcaaggaagttacctaatgatcttatttctttctctcatcttgagttatccgaaatcaaagactg-gtgttttcatcattgatgatttctttc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  15423717 gcagagagcaaggaagttacctaatgatcttatttctttctctcatcttgagttatccgaaatcaaagactgcgtgttttcatcattgatgctttctttc 15423816  T
Q  109 ctctcattctc 119  Q
    |||| ||||||    
T  15423817 ctcttattctc 15423827  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 69 - 194
Target Start/End: Complemental strand, 15452270 - 15452144
Alignment:
Q  69 aaatcaaagactggt-gttttcatcattgatgatttctttcctctcattctcnnnnnnnnnnnngttacttaaagttacatcttcataacgacgttttaa 167  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||||| ||            ||||||||||||||||||||||||||  ||||||||    
T  15452270 aaatcaaagactgcttgttttcatcattgatgctttctttcctctcattttctttgttatttttgttacttaaagttacatcttcataacatcgttttaa 15452171  T
Q  168 atgcagttacttgattgacgtttgatt 194  Q
    |||||||| ||||||||||||||||||    
T  15452170 atgcagttgcttgattgacgtttgatt 15452144  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 15452347 - 15452281
Alignment:
Q  13 gagagcaaggaagttacctaatgatcttatttctttctctcatcttgagttatccgaaatcaaagac 79  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  15452347 gagagcatggaagttacctaatgttcttatttctttctctcgtcttgagtcatccgaaatcaaagac 15452281  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 15513744 - 15513797
Alignment:
Q  227 gtttctttttataattttttgaaagtagttgatgcacttgtagcatgtacaatt 280  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  15513744 gtttctttttataattttatgaaagtagttgatgcacttgtatcatgtacaatt 15513797  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 15533428 - 15533470
Alignment:
Q  10 gcagagagcaaggaagttacctaatgatcttatttctttctct 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15533428 gcagagagcaaggaagttacctaatgatcttatttctttctct 15533470  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 15424092 - 15424145
Alignment:
Q  227 gtttctttttataattttttgaaagtagttgatgcacttgtagcatgtacaatt 280  Q
    ||||||||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  15424092 gtttctttttacaattttatgaaagtagttgatgcacttgtatcatgtacaatt 15424145  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 18376803 - 18376874
Alignment:
Q  49 ctctcatcttgagttatccgaaatcaaagactg-gtgttttcatcattgatgatttctttcctctcattctc 119  Q
    ||||| |||||||| ||| |||||||||||| | |||| ||||||||||||| |||||||||||||||||||    
T  18376803 ctctcgtcttgagtcatcggaaatcaaagacggcgtgtattcatcattgatgctttctttcctctcattctc 18376874  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 15445679 - 15445720
Alignment:
Q  11 cagagagcaaggaagttacctaatgatcttatttctttctct 52  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  15445679 cagagagcaaggaagttacctaatgttcttatttctttctct 15445720  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 15466096 - 15466043
Alignment:
Q  227 gtttctttttataattttttgaaagtagttgatgcacttgtagcatgtacaatt 280  Q
    ||||||||||| |||||| |||||||||||  |||||||||| |||||||||||    
T  15466096 gtttctttttacaattttatgaaagtagttattgcacttgtatcatgtacaatt 15466043  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 15482295 - 15482242
Alignment:
Q  227 gtttctttttataattttttgaaagtagttgatgcacttgtagcatgtacaatt 280  Q
    ||||||||| | |||||| ||||||||||| ||||||||||| |||||||||||    
T  15482295 gtttcttttcacaattttatgaaagtagttaatgcacttgtatcatgtacaatt 15482242  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 15482443 - 15482402
Alignment:
Q  11 cagagagcaaggaagttacctaatgatcttatttctttctct 52  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  15482443 cagagagcaaggaagtaacctaatgttcttatttctttctct 15482402  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 15540004 - 15539895
Alignment:
Q  11 cagagagcaaggaagttacctaatgatcttatttctttctctcatcttgagttatccgaaatcaaagactg-gtgttttcatcattgatgatttctttcc 109  Q
    ||||||||| ||||||||||||||| | |  || |||||| || |||||||| ||| ||| |||||||| | |||||||  ||||||||  |||||||||    
T  15540004 cagagagcacggaagttacctaatgttgtgtttactttctttcgtcttgagtgatcggaagtcaaagacagcgtgtttttgtcattgattctttctttcc 15539905  T
Q  110 tctcattctc 119  Q
    ||| ||||||    
T  15539904 tcttattctc 15539895  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 15429214 - 15429170
Alignment:
Q  140 aagttacatcttcataacgacgttttaaatgcagttacttgattg 184  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||||    
T  15429214 aagttgcatcttcacaacgacgttttaaatgcagtttcttgattg 15429170  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 15487609 - 15487565
Alignment:
Q  140 aagttacatcttcataacgacgttttaaatgcagttacttgattg 184  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||||    
T  15487609 aagttgcatcttcacaacgacgttttaaatgcagtttcttgattg 15487565  T

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Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 16942333 - 16942289
Alignment:
Q  140 aagttacatcttcataacgacgttttaaatgcagttacttgattg 184  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||||    
T  16942333 aagttgcatcttcacaacgacgttttaaatgcagtttcttgattg 16942289  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 280
Target Start/End: Original strand, 15426214 - 15426265
Alignment:
Q  229 ttctttttataattttttgaaagtagttgatgcacttgtagcatgtacaatt 280  Q
    ||||| ||| |||||| ||||||||||| ||||||||||| |||||||||||    
T  15426214 ttcttcttacaattttatgaaagtagttaatgcacttgtatcatgtacaatt 15426265  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 15451904 - 15451851
Alignment:
Q  227 gtttctttttataattttttgaaagtagttgatgcacttgtagcatgtacaatt 280  Q
    ||||||||||| |||||| ||||||| ||| || |||||||| |||||||||||    
T  15451904 gtttctttttacaattttatgaaagttgttaatacacttgtatcatgtacaatt 15451851  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 15533574 - 15533627
Alignment:
Q  227 gtttctttttataattttttgaaagtagttgatgcacttgtagcatgtacaatt 280  Q
    ||||||||| | |||||| ||||||||||| ||||| ||||| |||||||||||    
T  15533574 gtttcttttgacaattttatgaaagtagttaatgcagttgtatcatgtacaatt 15533627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 15858271 - 15858218
Alignment:
Q  227 gtttctttttataattttttgaaagtagttgatgcacttgtagcatgtacaatt 280  Q
    ||||||||| | |||||| ||||||||||| ||||| ||||| |||||||||||    
T  15858271 gtttcttttaacaattttatgaaagtagttaatgcaattgtatcatgtacaatt 15858218  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 15448742 - 15448698
Alignment:
Q  140 aagttacatcttcataacgacgttttaaatgcagttacttgattg 184  Q
    ||||| |||||||| ||||||||||||||||||||| | ||||||    
T  15448742 aagttgcatcttcacaacgacgttttaaatgcagtttcctgattg 15448698  T

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Target: scaffold1195 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 55 - 96
Alignment:
Q  11 cagagagcaaggaagttacctaatgatcttatttctttctct 52  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  55 cagagagcaaggaagttacctaatgttcttatttctttctct 96  T

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Target: scaffold1195; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 187 - 239
Alignment:
Q  227 gtttctttttataattttttgaaagtagttgatgcacttgtagcatgtacaat 279  Q
    ||||||||| | |||||| ||||||||||| ||||||||||| ||||||||||    
T  187 gtttcttttaacaattttatgaaagtagttaatgcacttgtatcatgtacaat 239  T

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Target: scaffold0957 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 894 - 857
Alignment:
Q  15 gagcaaggaagttacctaatgatcttatttctttctct 52  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  894 gagcaaggaagttacctaatgttcttatttctttctct 857  T

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Target: scaffold0957; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 753 - 700
Alignment:
Q  227 gtttctttttataattttttgaaagtagttgatgcacttgtagcatgtacaatt 280  Q
    ||||||||| | |||||| ||||||||||| ||||| ||||| |||||||||||    
T  753 gtttcttttaacaattttatgaaagtagttaatgcatttgtatcatgtacaatt 700  T

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