View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12045_low_2 (Length: 764)

Name: NF12045_low_2
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12045_low_2
NF12045_low_2
[»] chr4 (7 HSPs)
chr4 (233-747)||(45738541-45739056)
chr4 (2-199)||(45739047-45739244)
chr4 (375-529)||(45733334-45733488)
chr4 (648-747)||(45733071-45733170)
chr4 (560-635)||(35723391-35723467)
chr4 (575-626)||(20521871-20521922)
chr4 (575-625)||(12077815-12077865)
[»] chr7 (2 HSPs)
chr7 (560-626)||(32308106-32308172)
chr7 (560-626)||(22868028-22868094)
[»] chr1 (3 HSPs)
chr1 (561-626)||(6427336-6427401)
chr1 (577-626)||(2896145-2896194)
chr1 (577-626)||(36878447-36878496)
[»] chr8 (1 HSPs)
chr8 (560-620)||(31236584-31236644)
[»] chr2 (2 HSPs)
chr2 (575-623)||(18420456-18420504)
chr2 (577-625)||(21782842-21782890)
[»] chr6 (3 HSPs)
chr6 (560-626)||(7265600-7265666)
chr6 (558-623)||(19040341-19040406)
chr6 (575-608)||(32299279-32299312)
[»] chr5 (1 HSPs)
chr5 (577-635)||(28588698-28588756)


Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 233 - 747
Target Start/End: Complemental strand, 45739056 - 45738541
Alignment:
Q  233 aataattaaaatctgaatatgtgacagctacttacatacatcataatcgaaaattgcgtgagagagttgcgtgaatcagaaatcagnnnnnnn-gcaact 331  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||        ||||||    
T  45739056 aataattaaaatctgaatatgtgacagctacttacatacatcatcatcgaaaattgagtgagagagttgcgtgaatcagaaatcagaaaaaaaagcaact 45738957  T
Q  332 catgggttgggcaatagctttacacggcggcgccggcgacataccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgc 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45738956 catgggttgggcaatagctttacacggcggcgccggcgacataccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgc 45738857  T
Q  432 ctccaaatcggtgtcaaagctctcaaatccaacatggcacctctagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttcaa 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45738856 ctccaaatcggtgtcaaagctctcaaatccaacatggcacctctagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttcaa 45738757  T
Q  532 agcacgaacactcttcaaattagacgcagacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtc 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45738756 agcacgaacactcttcaaattagacgcagacacatacaatgaaattgaattatatgattttctcatattattatcagtctaggcgtgtcagtgtcatgtc 45738657  T
Q  632 gtgttgtgtatgcatccatgtttcatagctttcttctgttttgaatgtgattctgataataatcattgatcataggttcgtgagttggagaatattccac 731  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  45738656 gtgttgtgtatgcatccatgtttcatagctttcttctgttttgaatgtgattcttataataatcattgttcataggttcgtgagttggagaatattccac 45738557  T
Q  732 acttcaacgctggaag 747  Q
    ||||||||||||||||    
T  45738556 acttcaacgctggaag 45738541  T

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Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 45739244 - 45739047
Alignment:
Q  2 agtgagcttaaaaactcatttttgatgacattttcaaagtttatacacacctgtctagaaatgttagcgttgttaggttgttttcatgagagctgtgtga 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45739244 agtgagcttaaaaactcatttttgatgacattttcaaagtttatacacacctgtctagaaatgttagcgttgttaggttgttttcatgagagctgtgtga 45739145  T
Q  102 tttttgtgtcacatttcacatagatccatttttattactaattgtttgcaatttgcaatgcatactatacgaagaaaacgttaaaaataataattaaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45739144 tttttgtgtcacatttcacatagatccatttttattactaattgtttgcaatttgcaatgcatactatacgaagaaaacgttaaaaataataattaaa 45739047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 375 - 529
Target Start/End: Complemental strand, 45733488 - 45733334
Alignment:
Q  375 ccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatggcacctc 474  Q
    |||| ||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  45733488 ccattttcacttccaccggaagcccgtcagccacgcgaagaagctctccgtcactgcctccaaattggtgtcaaagctctcaaatccaacatgtcccctc 45733389  T
Q  475 tagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttc 529  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  45733388 tagacgtcgttgagcttgttgtatgtattcatcactcacaatatttatcactttc 45733334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 648 - 747
Target Start/End: Complemental strand, 45733170 - 45733071
Alignment:
Q  648 catgtttcatagctttcttctgttttgaatgtgattctgataataatcattgatcataggttcgtgagttggagaatattccacacttcaacgctggaag 747  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45733170 catgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcataggttcgtgagttggagaatattccacacttcaacgctggaag 45733071  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 560 - 635
Target Start/End: Original strand, 35723391 - 35723467
Alignment:
Q  560 gacacatacaatgaaattgaattatgtg-attttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgt 635  Q
    |||||||| ||| | ||||||||||||| ||||||||| ||||||| | || | |||||||||||||||||||||||    
T  35723391 gacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgtcatgtcgtgt 35723467  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 626
Target Start/End: Original strand, 20521871 - 20521922
Alignment:
Q  575 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 626  Q
    |||||||||||||||||| ||| ||||||||| || | ||||||||||||||    
T  20521871 attgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtc 20521922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 575 - 625
Target Start/End: Complemental strand, 12077865 - 12077815
Alignment:
Q  575 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgt 625  Q
    |||||||||||||||||||||| ||||||| |||| | | |||||||||||    
T  12077865 attgaattatgtgattttctcaaattattaacagtattgacgtgtcagtgt 12077815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 560 - 626
Target Start/End: Complemental strand, 32308172 - 32308106
Alignment:
Q  560 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 626  Q
    |||||||||||| | | |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  32308172 gacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 32308106  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 626
Target Start/End: Complemental strand, 22868094 - 22868028
Alignment:
Q  560 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 626  Q
    |||||||| ||| | | ||||||||||||||||||||||||||||   || | ||||||||||||||    
T  22868094 gacacatataattacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtc 22868028  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 626
Target Start/End: Complemental strand, 6427401 - 6427336
Alignment:
Q  561 acacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 626  Q
    ||||||| ||| | |||||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 6427336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 626
Target Start/End: Original strand, 2896145 - 2896194
Alignment:
Q  577 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 626  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  2896145 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 2896194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 626
Target Start/End: Complemental strand, 36878496 - 36878447
Alignment:
Q  577 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 626  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  36878496 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 620
Target Start/End: Original strand, 31236584 - 31236644
Alignment:
Q  560 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtc 620  Q
    |||||||| ||| | |||||||||||||||||||||| ||||||| |||| | ||||||||    
T  31236584 gacacatataattacattgaattatgtgattttctcaaattattagcagtgtcggcgtgtc 31236644  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 575 - 623
Target Start/End: Original strand, 18420456 - 18420504
Alignment:
Q  575 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagt 623  Q
    |||||||||||||||||||||| ||||||| |||| | |||||||||||    
T  18420456 attgaattatgtgattttctcaaattattagcagtgttggcgtgtcagt 18420504  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 577 - 625
Target Start/End: Original strand, 21782842 - 21782890
Alignment:
Q  577 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgt 625  Q
    |||||||||||||||||||| ||||||| |||| | |||||||||||||    
T  21782842 tgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgt 21782890  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 626
Target Start/End: Original strand, 7265600 - 7265666
Alignment:
Q  560 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 626  Q
    |||||||| ||| | | |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  7265600 gacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 7265666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 623
Target Start/End: Complemental strand, 19040406 - 19040341
Alignment:
Q  558 cagacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagt 623  Q
    |||||||||| ||| | | |||||||||||||||||||| ||||||| | || | |||||||||||    
T  19040406 cagacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagt 19040341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 608
Target Start/End: Complemental strand, 32299312 - 32299279
Alignment:
Q  575 attgaattatgtgattttctcatattattatcag 608  Q
    |||||||||||||||||||||| |||||||||||    
T  32299312 attgaattatgtgattttctcaaattattatcag 32299279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 635
Target Start/End: Original strand, 28588698 - 28588756
Alignment:
Q  577 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgt 635  Q
    |||||||||||||||||||| ||||||| | || | ||||||||| ||| |||||||||    
T  28588698 tgaattatgtgattttctcaaattattaccggtgtcggcgtgtcaatgttatgtcgtgt 28588756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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