View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12045_low_5 (Length: 579)

Name: NF12045_low_5
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12045_low_5
NF12045_low_5
[»] chr3 (2 HSPs)
chr3 (43-473)||(20597615-20598046)
chr3 (483-565)||(20597432-20597514)
[»] chr6 (2 HSPs)
chr6 (43-471)||(8698618-8699045)
chr6 (483-562)||(8698435-8698514)
[»] chr4 (1 HSPs)
chr4 (517-558)||(37101837-37101878)


Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 43 - 473
Target Start/End: Complemental strand, 20598046 - 20597615
Alignment:
Q  43 cattttataccccatcttgcccttttcatctgactgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgnnnnnnnn 142  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  20598046 cattttataccccatcttgcccttttcatctgagtgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgtttttttt 20597947  T
Q  143 -atgggtggtggctgaagattagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtcc 241  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20597946 tatgggtggtggctgaagatcagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtcc 20597847  T
Q  242 ttcatgaagatatctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcc 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20597846 ttcatgaagatatctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctgttagtagccatttcc 20597747  T
Q  342 tgcagtcacaagaccatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaacttatttgcacgcctacaaat 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20597746 tgcagtcacaagaccatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaat 20597647  T
Q  442 ataacatttcataaaattaatatcactactaa 473  Q
    ||||||||||||||||||||||||||||||||    
T  20597646 ataacatttcataaaattaatatcactactaa 20597615  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 483 - 565
Target Start/End: Complemental strand, 20597514 - 20597432
Alignment:
Q  483 tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatgtcc 565  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20597514 tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatgtcc 20597432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 43 - 471
Target Start/End: Complemental strand, 8699045 - 8698618
Alignment:
Q  43 cattttataccccatcttgcccttttcatctgactgttgtccaacaattcattggcatccttgtttcttctcttttttggtctaccaggttgnnnnnnnn 142  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||            
T  8699045 cattttataccccatcttgcccttttcatctgagtgttgtccaacaattcattagcatccttgtttcttctcttttttggtctaccaggttgttttttg- 8698947  T
Q  143 atgggtggtggctgaagattagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtcct 242  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  8698946 atgggtggtggctgaagatcagtgtactcagtcctttgccataaactttgaccattagccggataaatggaactagagtaacatgctacatatttgtcct 8698847  T
Q  243 tcatgaagatatctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcct 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  8698846 tcatgaagatatctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctgttagtaaccatttcct 8698747  T
Q  343 gcagtcacaagaccatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaacttatttgcacgcctacaaata 442  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  8698746 gcagtcacaagaccatctttgcaggttgacatgaaacttgtgaccagttaaagaaacatgtctaacttcataatcaaactcatttgcacgcctacaaata 8698647  T
Q  443 taacatttcataaaattaatatcactact 471  Q
    |||||||||||||||||| |||| |||||    
T  8698646 taacatttcataaaattagtatcgctact 8698618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 483 - 562
Target Start/End: Complemental strand, 8698514 - 8698435
Alignment:
Q  483 tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacactctgatg 562  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8698514 tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatg 8698435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 37101837 - 37101878
Alignment:
Q  517 tttctgcctgtttgcttcccatctctccatcaagtacactct 558  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
T  37101837 tttctgcctatttgcttcccatctctccatcaggtacactct 37101878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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