View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12045_low_7 (Length: 438)
Name: NF12045_low_7
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12045_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 237 - 427
Target Start/End: Original strand, 36465 - 36655
Alignment:
| Q |
237 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
336 |
Q |
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| T |
36465 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
36564 |
T |
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| Q |
337 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcct |
427 |
Q |
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| T |
36565 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcct |
36655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 34 - 174
Target Start/End: Original strand, 36266 - 36402
Alignment:
| Q |
34 |
tgataagtatagataatggttgaaaacggacttcactagatttagaatcattaccggaagcattgttttttaccttttaatcgtcattattaaatgatga |
133 |
Q |
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| T |
36266 |
tgataagtatagataatggttgaaa-cggacttcactagatttagaatcattaccggaagcattgttttttaccttttaatcgtcattattaa---atga |
36361 |
T |
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| Q |
134 |
tgagtatgagagaatatgagaacttaagttctactattaca |
174 |
Q |
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| T |
36362 |
tgagtatgagagaatatgagaacttacgttctactattaca |
36402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36218 - 36253
Alignment:
| Q |
1 |
tctgttgccacattttttaccagacaccatttatga |
36 |
Q |
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| T |
36218 |
tctgttgccacattttttaccagacaccatttatga |
36253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 263 - 418
Target Start/End: Complemental strand, 8675837 - 8675682
Alignment:
| Q |
263 |
tgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccattcaatctctttttcttcttactattgg |
362 |
Q |
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||||||| || |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||| | |||| ||| | |||| |
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| T |
8675837 |
tgcagtcaatcggttctctgcaaaagaaatattcgattggatcttttgaactgctgagtaagactgctcctattcaagctctctctcttattattcttgg |
8675738 |
T |
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| Q |
363 |
tccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctt |
418 |
Q |
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| T |
8675737 |
tccatttgttgattactatctcagtggcaagttgataaccaactttaagatgtctt |
8675682 |
T |
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