View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12045_low_8 (Length: 432)

Name: NF12045_low_8
Description: NF12045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12045_low_8
NF12045_low_8
[»] chr4 (6 HSPs)
chr4 (17-422)||(32708855-32709260)
chr4 (281-325)||(41238843-41238887)
chr4 (258-390)||(41200190-41200322)
chr4 (258-331)||(53380934-53381007)
chr4 (356-392)||(13571491-13571527)
chr4 (295-339)||(48985507-48985551)
[»] chr1 (3 HSPs)
chr1 (296-390)||(39526110-39526205)
chr1 (258-391)||(50414527-50414660)
chr1 (258-374)||(51316368-51316483)
[»] chr7 (3 HSPs)
chr7 (296-391)||(25296829-25296925)
chr7 (296-390)||(24978715-24978810)
chr7 (356-392)||(9705224-9705260)
[»] chr6 (2 HSPs)
chr6 (302-390)||(24667008-24667096)
chr6 (267-390)||(9082315-9082437)
[»] chr5 (3 HSPs)
chr5 (296-390)||(5860883-5860976)
chr5 (301-379)||(16263110-16263188)
chr5 (298-387)||(28094136-28094225)
[»] chr2 (3 HSPs)
chr2 (294-340)||(14377701-14377747)
chr2 (296-381)||(15282037-15282121)
chr2 (294-377)||(12023783-12023867)
[»] chr3 (4 HSPs)
chr3 (297-392)||(6992041-6992136)
chr3 (337-388)||(28562141-28562192)
chr3 (306-382)||(24182268-24182345)
chr3 (338-391)||(27801180-27801233)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 32709260 - 32708855
Alignment:
Q  17 catctagcttgtgatgttcttcagattttttaagttgtttcaggattttagtgtttacactgcatgaggatttgtaaatttcctacttgttttattactc 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32709260 catctagcttgtgatgttcttcagattttttaagctgtttcaggattttagtgtttacactgcatgaggatttgtaaatttcctacttgttttattactt 32709161  T
Q  117 ggaagatttggctnnnnnnntttagtattcaaagaagtgttcctatttttgtatgcatattatgtttgtatgttctcttatgagggattgagtttttaga 216  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709160 ggaagatttggctaaaaaaatttagtattcaaagaagtgttcctatttttgtatgcatattatgtttgtatgttctcttatgagggattgagtttttaga 32709061  T
Q  217 acgggtgaacttgcttaatcatctcaagcgaaaggaaccttgtaatccgaagtttggtcaggatgtaagtaaagttagaccaagaattgttccacccaga 316  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  32709060 acggatgaacttgcttactcatctcaagcgaaaggaaccttgtaatccgaagtttggtcaggatgtaaggaaagtcagaccaagaattgttccactcaga 32708961  T
Q  317 aattgaacttaggttcttccgaacaattagtcattagtggagctcattaaccacttgagcctaattgcttggtttcttcattagtttttattttgctagc 416  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32708960 tattgaacttaggttcttccgaacaattagtcgttagtggagctcattaaccacttgagcctaattgcttggtttcttcattagtttttattttgctagc 32708861  T
Q  417 cctttg 422  Q
    | ||||    
T  32708860 cttttg 32708855  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 41238843 - 41238887
Alignment:
Q  281 gtaagtaaagttagaccaagaattgttccacccagaaattgaact 325  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  41238843 gtaagtaaagtcaggccaagaattgttccacccagaaattgaact 41238887  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 41200322 - 41200190
Alignment:
Q  258 gtaatccgaagtttggtcaggatgtaagtaaagttagaccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattag-tgg 356  Q
    |||||||| ||||||| |  || ||||||| |||| | |||||||||||||||||||  | | ||||| ||||||| ||||  | || ||| || | |||    
T  41200322 gtaatccggagtttggccttgaggtaagtatagtttggccaagaattgttccacccaagattcgaactcaggttctcccgatga-ttcgtcctttggtgg 41200224  T
Q  357 agctcattaaccacttgagcctaattgcttggtt 390  Q
    ||||||||||| |||||||| |||||||||||||    
T  41200223 agctcattaacaacttgagcttaattgcttggtt 41200190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 331
Target Start/End: Complemental strand, 53381007 - 53380934
Alignment:
Q  258 gtaatccgaagtttggtcaggatgtaagtaaagttagaccaagaattgttccacccagaaattgaacttaggtt 331  Q
    |||||||| ||||||| | ||| ||||||||||   | ||||||||||||||||| || ||| |||||||||||    
T  53381007 gtaatccgtagtttggccgggaggtaagtaaagcctggccaagaattgttccacctaggaatcgaacttaggtt 53380934  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 13571527 - 13571491
Alignment:
Q  356 gagctcattaaccacttgagcctaattgcttggtttc 392  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  13571527 gagctcgttaaccacttgagcctaatcgcttggtttc 13571491  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 48985507 - 48985551
Alignment:
Q  295 accaagaattgttccacccagaaattgaacttaggttcttccgaa 339  Q
    ||||||||||||||||||||  ||| |||||||||||||| ||||    
T  48985507 accaagaattgttccacccatgaatcgaacttaggttctttcgaa 48985551  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 390
Target Start/End: Complemental strand, 39526205 - 39526110
Alignment:
Q  296 ccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagt-cattagtggagctcattaaccacttgagcctaattgcttggtt 390  Q
    ||||||||||||||||| |||||| |||| |||||||| || ||||||| || | || ||||||||||||| ||||||||||| ||||||||||||    
T  39526205 ccaagaattgttccacctagaaatcgaacctaggttctcccaaacaattcgttctttggtggagctcattagccacttgagcccaattgcttggtt 39526110  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 391
Target Start/End: Original strand, 50414527 - 50414660
Alignment:
Q  258 gtaatccgaagtttggtcaggatgtaagtaaagt-tagaccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtgg 356  Q
    |||||||| |||| || ||||| ||||| ||||| ||| |||||||||||||||||||| |||||||||  |||||| | |||||||| ||| || ||||    
T  50414527 gtaatccgtagttcggccaggaggtaagaaaagtctag-ccaagaattgttccacccaggaattgaactcgggttctcctgaacaattcgtctttggtgg 50414625  T
Q  357 agctcattaaccacttgagcctaattgcttggttt 391  Q
    |||||||| ||||||||| |  ||||| |||||||    
T  50414626 agctcattgaccacttgatctcaattgtttggttt 50414660  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 374
Target Start/End: Complemental strand, 51316483 - 51316368
Alignment:
Q  258 gtaatccgaagtttggtcaggatgtaagtaaagttagaccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtgga 357  Q
    |||||| |||||| |||||||| ||||||||| |  ||| ||||||||||||||| | ||||  ||| | || |||||| || |||| |||||| ||| |    
T  51316483 gtaatctgaagttcggtcaggaggtaagtaaaatctgactaagaattgttccaccaaaaaatcaaac-tcggatcttccaaataattcgtcatttgtgaa 51316385  T
Q  358 gctcattaaccacttga 374  Q
     ||||||||||| ||||    
T  51316384 actcattaaccatttga 51316368  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 391
Target Start/End: Original strand, 25296829 - 25296925
Alignment:
Q  296 ccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattag-tggagctcattaaccacttgagcctaattgcttggttt 391  Q
    ||||||||||||||||| || |||  |||| | ||||| | |||| ||| ||| || | |||||||||||||||||||||||| |||||||||||||    
T  25296829 ccaagaattgttccaccgaggaatcaaactcaagttctcctgaacgattcgtcctttggtggagctcattaaccacttgagccaaattgcttggttt 25296925  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 390
Target Start/End: Complemental strand, 24978810 - 24978715
Alignment:
Q  296 ccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattag-tggagctcattaaccacttgagcctaattgcttggtt 390  Q
    ||||||||||||||||| || ||| ||||| | ||||| || ||||||| ||| || | |||| ||||||||||||||||||| |||  |||||||    
T  24978810 ccaagaattgttccacctaggaatcgaactcacgttctcccaaacaatttgtcctttggtggaactcattaaccacttgagcccaatcacttggtt 24978715  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 9705260 - 9705224
Alignment:
Q  356 gagctcattaaccacttgagcctaattgcttggtttc 392  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  9705260 gagctcgttaaccacttgagcctaatcgcttggtttc 9705224  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 390
Target Start/End: Complemental strand, 24667096 - 24667008
Alignment:
Q  302 attgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtggagctcattaaccacttgagcctaattgcttggtt 390  Q
    |||||||||||||  ||||||||| ||||||| | |||||||| ||| || ||  | ||||||||||||||||||| |||| |||||||    
T  24667096 attgttccacccaagaattgaactcaggttctcctgaacaattcgtcctttgtaaaactcattaaccacttgagcccaattacttggtt 24667008  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 390
Target Start/End: Original strand, 9082315 - 9082437
Alignment:
Q  267 agtttggtcaggatgtaagtaaagttagaccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtggagctcattaa 366  Q
    |||||||||||||||||| ||||||| |  | ||||||| || | | ||||| |||||| ||||| | | ||| ||||  || ||||||||||| |||||    
T  9082315 agtttggtcaggatgtaa-taaagtttggtcgagaattggtcaaactagaaactgaactcaggttttcctgaataattcatccttagtggagcttattaa 9082413  T
Q  367 ccacttgagcctaattgcttggtt 390  Q
    ||||||||||  ||||||||||||    
T  9082414 ccacttgagctcaattgcttggtt 9082437  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 390
Target Start/End: Original strand, 5860883 - 5860976
Alignment:
Q  296 ccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtggagctcattaaccacttgagcctaattgcttggtt 390  Q
    |||| |||| |||||||||||||| ||||| ||||||| | |||||| |  || ||||||||||||||| ||||||||| || | ||||||||||    
T  5860883 ccaaaaattcttccacccagaaatcgaactcaggttctcctgaacaactcatccttagtggagctcatt-accacttgaacccagttgcttggtt 5860976  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 16263110 - 16263188
Alignment:
Q  301 aattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtggagctcattaaccacttgagccta 379  Q
    ||||||||||| ||||||||||||| ||||||| |  |||||||  || || |||| ||||||||||||||| ||||||    
T  16263110 aattgttccactcagaaattgaactcaggttctcctaaacaattcatccttggtggggctcattaaccactttagccta 16263188  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 387
Target Start/End: Complemental strand, 28094225 - 28094136
Alignment:
Q  298 aagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattag-tggagctcattaaccacttgagcctaattgcttg 387  Q
    ||||||||||||| |||  ||||||||| ||||||| |   |||||| |||||| | |||||||||||||||||||||||| |||| ||||    
T  28094225 aagaattgttccatccaagaattgaact-aggttctcctacacaattcgtcatttggtggagctcattaaccacttgagcccaattacttg 28094136  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 14377747 - 14377701
Alignment:
Q  294 gaccaagaattgttccacccagaaattgaacttaggttcttccgaac 340  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||    
T  14377747 gaccaagaattgttccacccaaaaattgaacttgagttcttccgaac 14377701  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 381
Target Start/End: Original strand, 15282037 - 15282121
Alignment:
Q  296 ccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattagtggagctcattaaccacttgagcctaat 381  Q
    ||||||||||||||| | ||||||||||||| |||| ||| | || ||| ||| |  | |||||||||||||||||||||| ||||    
T  15282037 ccaagaattgttccaac-agaaattgaacttgggtttttctgcacgatttgtcctagggggagctcattaaccacttgagcttaat 15282121  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 12023783 - 12023867
Alignment:
Q  294 gaccaagaattgttccacccagaaattgaacttaggttcttccgaacaattagt-cattagtggagctcattaaccacttgagcc 377  Q
    |||||||||||||||||||||| ||| |||||  ||| || |||||||||| || | || | ||||||||||||  |||||||||    
T  12023783 gaccaagaattgttccacccaggaatcgaactcgggtcctcccgaacaattcgtcctttggaggagctcattaataacttgagcc 12023867  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 392
Target Start/End: Complemental strand, 6992136 - 6992041
Alignment:
Q  297 caagaattgttccacccagaaattgaacttaggttcttccgaacaattagtcattag-tggagctcattaaccacttgagcctaattgcttggtttc 392  Q
    ||||||||||||||||||| ||| |||||  |||||| | |||||||| ||| || | || ||||||||| |||||||||||||||  |||||||||    
T  6992136 caagaattgttccacccaggaatcgaactc-ggttctccggaacaattcgtcctttggtgaagctcattatccacttgagcctaatcacttggtttc 6992041  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 388
Target Start/End: Original strand, 28562141 - 28562192
Alignment:
Q  337 gaacaattagtcattagtggagctcattaaccacttgagcctaattgcttgg 388  Q
    |||||||| |||||| ||||||||||||||||||||||| | |||| |||||    
T  28562141 gaacaattcgtcattggtggagctcattaaccacttgagtccaattacttgg 28562192  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 24182268 - 24182345
Alignment:
Q  306 ttccacccagaaattgaacttaggttcttccgaacaattagtcatt-agtggagctcattaaccacttgagcctaatt 382  Q
    ||||||| | |||| ||||| ||||||| |||||||||| |||||| | ||||| | |||||||||||||| ||||||    
T  24182268 ttccacctaaaaatagaactcaggttctaccgaacaatttgtcatttaatggagtttattaaccacttgagtctaatt 24182345  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 27801180 - 27801233
Alignment:
Q  338 aacaattagtcattagtggagctcattaaccacttgagcctaattgcttggttt 391  Q
    |||||||| | ||| ||||||||||||||||| |||||| |||||| |||||||    
T  27801180 aacaattatttattggtggagctcattaaccaattgagcttaattgtttggttt 27801233  T

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