View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12046_high_4 (Length: 405)
Name: NF12046_high_4
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12046_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 389
Target Start/End: Complemental strand, 40064337 - 40063954
Alignment:
| Q |
9 |
agcaaaggtgataggattgatattgatttgaccaacnnnnnnngagtttattatttatttgtaatgatttaaacgtcagcttgtgccaagtaacaatctt |
108 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40064337 |
agcaaaggtgataggattgatatcgatttgaccaaaaaaaaaagagtttattatttatttgtaatgatttaaacgtctgcttgtgccaagtaacaatctt |
40064238 |
T |
|
| Q |
109 |
gagatacaagttagatgtt---tgtaaatactttgacgctcaagtagatgtattgaaatgatagaggtaatatacattgtgttgtggtttaatgacctat |
205 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40064237 |
gagatacaagttagatgttgtttgtaaatacttcgaagctcaagtagaggtattgaaatgatagaggtgatatacattgtgttgtggtttaatgacctat |
40064138 |
T |
|
| Q |
206 |
atatacggttgagaaaggagttattttcgtagtcgttgagacgcgattacggaaggtggatgttagtattgaaattgtcgttctcgttctgcatttatgg |
305 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
40064137 |
atatacaattgagaaaggagttattttcgtagtcgttgagacgcgattacggaaggtggatattagtattgaaattgtcgttcttgttttgcatttatgg |
40064038 |
T |
|
| Q |
306 |
atctgcaatgatcctaagcttcctaatctttaaggatgttggaccattagagcatagttgagggtggtgccttgatgtcatatg |
389 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40064037 |
atctgcaatgatcctaagctccctaatctttaaggatgttggaccattagagcatagttgagggtggtgccttgatgtcatatg |
40063954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University