View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12046_high_8 (Length: 237)
Name: NF12046_high_8
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12046_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21097541 - 21097320
Alignment:
| Q |
1 |
ctgcatttctgctactattgaaattagatctgccaacatcccaacttagcagccaaggacttggccaataagagctagaaacatcgcgaccatcgtaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21097541 |
ctgcatttctgctactattgaaattagatctgccaacatcccaacttagcagccaaggacttggccaataagagctagaaacatcgcgaccgtcgtaatg |
21097442 |
T |
|
| Q |
101 |
aagaccgagaatgttttcatcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21097441 |
aagaccgagaatgttttcatcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaaga |
21097342 |
T |
|
| Q |
201 |
ggttgacctggaaggagagtat |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
21097341 |
ggttgacctggaaggagagtat |
21097320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 21107159 - 21106939
Alignment:
| Q |
2 |
tgcatttctgctactattgaaattagatctgccaacatcccaacttagcagccaaggacttggccaataagagctagaaacatcgcgaccatcgtaatga |
101 |
Q |
| |
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|||| ||||||||| ||||||||||| |||||||| | | || |||| |||||||| ||||||||||||||||||||| ||| | ||||| |||||| |
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| T |
21107159 |
tgcaattctgctaccattgaaattagccctgccaacttgcgaaattagaagccaaggttttggccaataagagctagaaatatcagggccatcataatga |
21107060 |
T |
|
| Q |
102 |
agaccgagaatgttttcatcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagag |
201 |
Q |
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||||| |||| ||| ||||||||||| ||||| | |||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
21107059 |
agaccaagaacatttgcatcatcaaagtagaacttgtagaagccagtagaatgattactctcacttcttgaagctacaagctttgtatatcttgtaagag |
21106960 |
T |
|
| Q |
202 |
gttgacctggaaggagagtat |
222 |
Q |
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||||||||||||||||||||| |
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| T |
21106959 |
gttgacctggaaggagagtat |
21106939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 21112829 - 21112933
Alignment:
| Q |
119 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
218 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||| | ||| ||||||| ||||| ||||||||||| || ||||||||| ||||||||| |
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| T |
21112829 |
atcatcaaagaacaacttataaaagccagaagaatgattactatggcttcttgaagaaacaaggtttgtatatctagtgagaggttgattaggaaggaga |
21112928 |
T |
|
| Q |
219 |
gtatt |
223 |
Q |
| |
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||||| |
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| T |
21112929 |
gtatt |
21112933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 21131789 - 21131894
Alignment:
| Q |
119 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
218 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||| ||||| || || |||||| ||||||||| |
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| T |
21131789 |
atcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattaggaaggaga |
21131888 |
T |
|
| Q |
219 |
gtattg |
224 |
Q |
| |
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|||||| |
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|
| T |
21131889 |
gtattg |
21131894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 18659951 - 18660055
Alignment:
| Q |
119 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
218 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| | ||| ||||||| ||||| ||| | ||||| || ||||||||| ||||||||| |
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| T |
18659951 |
atcatcaaagaaaaacttatagaagccagaagaatgattactttggctttttgaagaaacaagttttatgtatctagtgagaggttgattaggaaggaga |
18660050 |
T |
|
| Q |
219 |
gtatt |
223 |
Q |
| |
|
||||| |
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|
| T |
18660051 |
gtatt |
18660055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 21124223 - 21124279
Alignment:
| Q |
119 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaaga |
175 |
Q |
| |
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|||||||||||| || ||||||||||||||||||||||||||| ||| ||||||| |
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| T |
21124223 |
atcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaaga |
21124279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 39130947 - 39130843
Alignment:
| Q |
119 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
218 |
Q |
| |
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||||||||| || ||| ||||||||||||||||||||||||||| |||| |||| || |||| ||||| ||||| || ||||||||| ||||||||| |
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| T |
39130947 |
atcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaccaagttttgtgtatctagtgagaggttgattaggaaggaga |
39130848 |
T |
|
| Q |
219 |
gtatt |
223 |
Q |
| |
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||||| |
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|
| T |
39130847 |
gtatt |
39130843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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