View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12046_high_9 (Length: 210)
Name: NF12046_high_9
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12046_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 4976808 - 4976878
Alignment:
| Q |
134 |
accctaaaaatgcgtttccttcttctccttttctttctcttccatttccactaccaccatgttctctctgc |
204 |
Q |
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| T |
4976808 |
accctaaaaatgcgtttccttcttctccttttctttctcttccatttccactaccaccatgttctctctgc |
4976878 |
T |
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Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 4976693 - 4976749
Alignment:
| Q |
19 |
aacctcagtgggtggttcttcctaccctctctacccatacacactaatcgtgtgttg |
75 |
Q |
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| T |
4976693 |
aacctcagtgggtggttcttcctaccctctctacccatacacactaatcgtgtgttg |
4976749 |
T |
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