View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12046_low_1 (Length: 1288)

Name: NF12046_low_1
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12046_low_1
NF12046_low_1
[»] chr2 (7 HSPs)
chr2 (218-706)||(12995348-12995837)
chr2 (972-1270)||(12997942-12998240)
chr2 (1-225)||(12994749-12994974)
chr2 (731-812)||(12997466-12997547)
chr2 (830-906)||(12997800-12997876)
chr2 (795-830)||(12997715-12997750)
chr2 (1-31)||(22303201-22303231)
[»] chr8 (4 HSPs)
chr8 (310-397)||(8988351-8988438)
chr8 (740-777)||(18325225-18325262)
chr8 (2-31)||(10591917-10591946)
chr8 (1-30)||(16881095-16881124)
[»] chr6 (6 HSPs)
chr6 (301-394)||(22916802-22916896)
chr6 (301-394)||(22901971-22902066)
chr6 (301-380)||(22884087-22884168)
chr6 (2-31)||(9395370-9395399)
chr6 (2-35)||(31368652-31368685)
chr6 (1-30)||(32644622-32644651)
[»] chr1 (3 HSPs)
chr1 (299-394)||(30986678-30986774)
chr1 (298-393)||(30989894-30989990)
chr1 (296-334)||(30989855-30989893)
[»] chr5 (2 HSPs)
chr5 (1-32)||(31748333-31748364)
chr5 (1-30)||(26627329-26627358)
[»] chr4 (4 HSPs)
chr4 (1-38)||(4974101-4974139)
chr4 (1-30)||(31995959-31995988)
chr4 (1-30)||(32901328-32901357)
chr4 (1-30)||(54251493-54251522)
[»] chr3 (3 HSPs)
chr3 (3-33)||(45205284-45205314)
chr3 (1-31)||(51137079-51137109)
chr3 (3-32)||(37134651-37134680)
[»] chr7 (1 HSPs)
chr7 (1-30)||(42598251-42598280)


Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 218 - 706
Target Start/End: Original strand, 12995348 - 12995837
Alignment:
Q  218 cttaacgttattttttgtggtgttataa-gtaactagacaaaacaaaaaggaaaaagtagaggaaattaaggtccaagttatactaatgactatgaatat 316  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12995348 cttaacgttattttttgtggtgttataaagtaactagacaaaacaaaaaggaaaaagcagaggaaattaaggtccaagttatactaatgactatgaatat 12995447  T
Q  317 gtaaacaataaacatcatcaaaatacttaatacctagtttaatcaagcatcaccaaaacaactctaacaccaagggcaactttatatacacctttaattt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  12995448 gtaaacaataaacatcatcaaaatacttaatacctagtttaatcaagcatcaccaaaacaactataacaccaagggcaacttcatatacacctttaattt 12995547  T
Q  417 ttctctattcattttcgttctagaaattttaactggtggagctaagattttatactttataaaaatagcacaaacgaaaagacttaactacnnnnnnntt 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  12995548 ttctctattcattttcgttctagaaattttaactggtggagctaagattttatactttataaaaatagcacaaacgaaaagacttaactacaaaaaaatt 12995647  T
Q  517 aaatcagggagaagaatttagagaaaaacaactaacatctctatctaaaccttcactaaacttagtgacagtggagttattgagaaacttcatatttttt 616  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12995648 aaatcagggagaagagtttagagaaaaacaactaacatctctgtctaaaccttcactaaacttagtgacagtggagttattgagaaacttcatatttttt 12995747  T
Q  617 ccttgaatgaatttatttttatattttcaactctatcaaaaacatatttctttagataatgtatttaaccaaacaaacattcatcactac 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||| ||||    
T  12995748 ccttgaatgaatttatttttatattttcaactctatcaaaaacatatttctttatataatgtatgtagccaaacaaacattcatcgctac 12995837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 972 - 1270
Target Start/End: Original strand, 12997942 - 12998240
Alignment:
Q  972 ctttccatgttatttttctaggggctgcacgtcattgttggtttaacgggatgataacatggttgggaagacatcaaaccataacgatgtttttgtattt 1071  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12997942 ctttccatgttatttttctaggggctgcacgtcattgttggtttaacgggatgataacatggttgggaagacatcaaaccataacgatgtttttgtattt 12998041  T
Q  1072 ctaattttgtctaaaaaacttaatagcacacacatataattagatcaagtcatgtcctgtgctaggagaacatgtgataatgttgcacaaattcattcga 1171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12998042 ctaattttgtctaaaaaacttaatagcacacacatataattagatcaagtcatgtcctgttctaggagaacatgtgataatgttgcacaaattcattcga 12998141  T
Q  1172 tcaatacatatgagtcgtacaataatgtaatatggatttgacaattcaggataagataggatcctacctcgtcttgaatgaaatagacatcaagcatat 1270  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12998142 tcaatacatatgtgtcgtacaataatgtaatatggatttaacaattcaggataagataggctcctacctcgtcttgaatgaaatagacatcaagcatat 12998240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 12994749 - 12994974
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctcaaatataattcgctcatatgacaatctaccaaattacttttaatgtc--aatttgatatcatgaatgtcta 98  Q
    |||||||| ||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  12994749 aaaaaataattgtacaaatatcatttttcaaatataattcactcagatgacaatctaccaaattacttttaatgccaaaatttgatatcatgaatgtcta 12994848  T
Q  99 aaagagaagaatatataaattacaaatttaaaatctnnnnnnnnntacaaaaagtaaattggaattcattcaaacgatagatgaaaaactgcatctaatt 198  Q
    ||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12994849 aaagagaagaatatataaattacaaatttaaaatct-aaaaaaaatacaaaaagtaaattggaattcattcaaacgatagatgaaaaagtgcatctaatt 12994947  T
Q  199 gaaaatatactatacttatcttaacgt 225  Q
    |||||||||||||||||||||||||||    
T  12994948 gaaaatatactatacttatcttaacgt 12994974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 731 - 812
Target Start/End: Original strand, 12997466 - 12997547
Alignment:
Q  731 aactttcacataattgtacatttaattcttcaaaaataaaataattcttaatggatacaccatttgactatagaaaaatgat 812  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12997466 aactttcacataattgtacatttaattcttcaaaaataaaataattcttaatggatacaccatttgactatagaaaaatgat 12997547  T

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Target: chr2; HSP #5
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 830 - 906
Target Start/End: Original strand, 12997800 - 12997876
Alignment:
Q  830 ataagtttagtggagaaaactgcacccaatttagtgtacatacatccgttcatgatcacatcatttacttatcatat 906  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12997800 ataagtttagtggagacaactgcccccaatttagtatacatacatccgttcatgatcacatcatttacttatcatat 12997876  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 795 - 830
Target Start/End: Original strand, 12997715 - 12997750
Alignment:
Q  795 tgactatagaaaaatgatagtaacattatttagaaa 830  Q
    ||||||||||||||||||||||||||||||||||||    
T  12997715 tgactatagaaaaatgatagtaacattatttagaaa 12997750  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 22303231 - 22303201
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctcaa 31  Q
    |||||||||||||||||||||||||||||||    
T  22303231 aaaaaatagttgtacaaatatcatttctcaa 22303201  T

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Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 8988438 - 8988351
Alignment:
Q  310 tgaatatgtaaacaataaacatcatcaaaatacttaatacctagtttaatcaagcatcaccaaaacaactctaacaccaagggcaact 397  Q
    |||| |||||||||||||| |||||||| | ||||||||| |||| ||||||| ||||| |||||||||||| |||||||||||||||    
T  8988438 tgaacatgtaaacaataaatatcatcaacacacttaatacatagtataatcaaacatcatcaaaacaactcttacaccaagggcaact 8988351  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 740 - 777
Target Start/End: Original strand, 18325225 - 18325262
Alignment:
Q  740 ataattgtacatttaattcttcaaaaataaaataattc 777  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  18325225 ataattgtacatttaattcttcaaaaataaaattattc 18325262  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 10591917 - 10591946
Alignment:
Q  2 aaaaatagttgtacaaatatcatttctcaa 31  Q
    ||||||||||||||||||||||||||||||    
T  10591917 aaaaatagttgtacaaatatcatttctcaa 10591946  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 16881095 - 16881124
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctca 30  Q
    ||||||||||||||||||||||||||||||    
T  16881095 aaaaaatagttgtacaaatatcatttctca 16881124  T

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Target: chr6 (Bit Score: 51; Significance: 1e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 22916896 - 22916802
Alignment:
Q  301 taatgactatgaatatgtaaacaataaacatcatcaaaatacttaatacctag-tttaatcaagcatcaccaaaacaactctaacaccaagggca 394  Q
    |||| |||||||| ||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||| |  ||||||||||    
T  22916896 taattactatgaacatgtaaacaataaacatcatcaacacacttaatacctagttttaatcaaacatcatcaaaacaactccattaccaagggca 22916802  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 22902066 - 22901971
Alignment:
Q  301 taatgactatgaatatgtaaacaataaacatcatcaaa-atacttaatacctag-tttaatcaagcatcaccaaaacaactctaacaccaagggca 394  Q
    |||| |||||||| |||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||| |  ||||||||||    
T  22902066 taattactatgaacatgtaaacaataaacatcatcaaacacacttaatacctagttttaatcaaacatcatcaaaacaactccattaccaagggca 22901971  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 22884168 - 22884087
Alignment:
Q  301 taatgactatgaatatgtaaacaataaacatcatcaaa-atacttaatacctag-tttaatcaagcatcaccaaaacaactc 380  Q
    |||| |||||||| |||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| |||||||||||    
T  22884168 taattactatgaacatgtaaacaataaacatcatcaaacacacttaatacctagttttaatcaatcatcatcaaaacaactc 22884087  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 9395370 - 9395399
Alignment:
Q  2 aaaaatagttgtacaaatatcatttctcaa 31  Q
    ||||||||||||||||||||||||||||||    
T  9395370 aaaaatagttgtacaaatatcatttctcaa 9395399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 31368652 - 31368685
Alignment:
Q  2 aaaaatagttgtacaaatatcatttctcaaatat 35  Q
    |||||| |||||||||||||||||||||||||||    
T  31368652 aaaaatggttgtacaaatatcatttctcaaatat 31368685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 32644651 - 32644622
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctca 30  Q
    ||||||||||||||||||||||||||||||    
T  32644651 aaaaaatagttgtacaaatatcatttctca 32644622  T

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Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 394
Target Start/End: Original strand, 30986678 - 30986774
Alignment:
Q  299 actaatgactatgaatatgtaaacaataaacatcatcaaaatacttaatacctagt-ttaatcaagcatcaccaaaacaactctaacaccaagggca 394  Q
    |||||| ||||||||||||||||||||||  ||| |||| | |||||||| | | | |||||||| ||||| |||||||||||||||| ||||||||    
T  30986678 actaattactatgaatatgtaaacaataataatcttcaacacacttaatatccaatcttaatcaaacatcatcaaaacaactctaacatcaagggca 30986774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 30989894 - 30989990
Alignment:
Q  298 tactaatgactatgaatatgtaaacaataaacatcatcaaaatacttaatacctagt-ttaatcaagcatcaccaaaacaactctaacaccaagggc 393  Q
    ||||||| ||||| || ||||||| ||||||||||||||| | |||||||||||||| |||||||| ||| | ||||||||||| ||  ||||||||    
T  30989894 tactaattactataaacatgtaaataataaacatcatcaacacacttaatacctagtcttaatcaaacatgatcaaaacaactccaatgccaagggc 30989990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 30989855 - 30989893
Alignment:
Q  296 tatactaatgactatgaatatgtaaacaataaacatcat 334  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  30989855 tatactaattactatgaacatgtaaacaataaacatcat 30989893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 31748364 - 31748333
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctcaaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  31748364 aaaaaatagttgtacaaatatcatttctcaaa 31748333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 26627358 - 26627329
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctca 30  Q
    ||||||||||||||||||||||||||||||    
T  26627358 aaaaaatagttgtacaaatatcatttctca 26627329  T

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Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4974139 - 4974101
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctca-aatataat 38  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  4974139 aaaaaatagttgtacaaatatcatttctcataatataat 4974101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 31995959 - 31995988
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctca 30  Q
    ||||||||||||||||||||||||||||||    
T  31995959 aaaaaatagttgtacaaatatcatttctca 31995988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 32901357 - 32901328
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctca 30  Q
    ||||||||||||||||||||||||||||||    
T  32901357 aaaaaatagttgtacaaatatcatttctca 32901328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 54251493 - 54251522
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctca 30  Q
    ||||||||||||||||||||||||||||||    
T  54251493 aaaaaatagttgtacaaatatcatttctca 54251522  T

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Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 45205314 - 45205284
Alignment:
Q  3 aaaatagttgtacaaatatcatttctcaaat 33  Q
    |||||||||||||||||||||||||||||||    
T  45205314 aaaatagttgtacaaatatcatttctcaaat 45205284  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 51137079 - 51137109
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctcaa 31  Q
    |||||||||||||||||||||||||||||||    
T  51137079 aaaaaatagttgtacaaatatcatttctcaa 51137109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 37134651 - 37134680
Alignment:
Q  3 aaaatagttgtacaaatatcatttctcaaa 32  Q
    ||||||||||||||||||||||||||||||    
T  37134651 aaaatagttgtacaaatatcatttctcaaa 37134680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 42598251 - 42598280
Alignment:
Q  1 aaaaaatagttgtacaaatatcatttctca 30  Q
    ||||||||||||||||||||||||||||||    
T  42598251 aaaaaatagttgtacaaatatcatttctca 42598280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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