View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12046_low_11 (Length: 208)

Name: NF12046_low_11
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12046_low_11
NF12046_low_11
[»] chr3 (9 HSPs)
chr3 (12-192)||(38028958-38029138)
chr3 (12-192)||(38040273-38040453)
chr3 (12-192)||(38033971-38034152)
chr3 (12-190)||(38036987-38037166)
chr3 (14-192)||(50909729-50909908)
chr3 (11-192)||(55084552-55084731)
chr3 (19-172)||(38025087-38025240)
chr3 (42-160)||(38031551-38031668)
chr3 (116-172)||(50912081-50912137)
[»] chr8 (2 HSPs)
chr8 (12-192)||(21604946-21605129)
chr8 (21-172)||(21607508-21607658)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 38029138 - 38028958
Alignment:
Q  12 agcaaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38029138 agcaaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacacttatc 38029039  T
Q  112 ttatatctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcat 192  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  38029038 ttatatctgagaaattcatcttgttcttcaaaacatttgaaatgggtttccgtttacctgcagctattagacgggcttcat 38028958  T

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Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 38040453 - 38040273
Alignment:
Q  12 agcaaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatc 111  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||    
T  38040453 agcaaagggatttcaagaaactcttgtaaactataaatatagtgtcctccttcacaacaatcacaaatcactcaaacaatcaaacttatatacatttatc 38040354  T
Q  112 ttatatctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcat 192  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38040353 ttacatctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcat 38040273  T

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Target: chr3; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 38034152 - 38033971
Alignment:
Q  12 agcaaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatc 111  Q
    |||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||    
T  38034152 agcaaagggatttcaacaaactcttggaaactataaatatagggtcctccttcacaacaatcacaaatcactcaagcaatcaaacttatatacacttatc 38034053  T
Q  112 ttatatctgagaaattcatcttgttcatc-aaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcat 192  Q
    ||| ||||||||||||| |||||||| || |||| | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  38034052 ttacatctgagaaattcgtcttgttcttcaaaaaaaattgaaatgggtttccgtttacctgcagctattagacgggcttcat 38033971  T

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Target: chr3; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 38037166 - 38036987
Alignment:
Q  12 agcaaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatc 111  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  38037166 agcaaagggatttcaaaaaactcttggaaactataaatataatgtcctccttcacaacaatcacaaatcactcaagcaaacaaacttatatacatttatc 38037067  T
Q  112 ttatatctgagaaattcatcttgttcatc-aaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttc 190  Q
    ||| || ||||||||||||||||||| || |||| |  |||||||||||| |||||| ||||||||||||||||||||||    
T  38037066 ttacatttgagaaattcatcttgttcttcaaaaaaaactgaaatgggtttccgtttacctgcagctattagacgggcttc 38036987  T

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Target: chr3; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 50909729 - 50909908
Alignment:
Q  14 caaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatctt 113  Q
    |||||||||||||| |||||||| |||||||||||||  |||||||| ||||||||| ||||||||||||||||||||||| |||  |||| ||||||||    
T  50909729 caaagggatttcaagaaactcttagaaactataaatattgtgtcctcattcacaacactcacaaatcactcaagcaatcaaacttggatacttttatctt 50909828  T
Q  114 atatctgagaaattcatctt-gttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcat 192  Q
    | ||||||||||||||||||  ||| |||||||||||||||||||||| |||||| | |||||||||||||| |||||||    
T  50909829 acatctgagaaattcatcttatttcttcaaaacatttgaaatgggtttccgtttaccagcagctattagacgagcttcat 50909908  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 55084552 - 55084731
Alignment:
Q  11 aagcaaagggatttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttat 110  Q
    ||||||| | ||||||| ||||||||| |||||||||||||| ||||||| ||||||||  |||||||| ||||| |||| |||  ||  |||| ||| |    
T  55084552 aagcaaatgaatttcaataaactcttgaaaactataaatacattgtcctctttcacaac-ttcacaaattactcaggcaaacaaatttagataccttttt 55084650  T
Q  111 cttatatctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcat 192  Q
    |||| |||||| ||||||| ||||||  |||||||||||||||| ||||| |||||| |||||||||||||| || ||||||    
T  55084651 cttaaatctgataaattcagcttgttattcaaaacatttgaaat-ggtttccgtttacctgcagctattagaaggacttcat 55084731  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 38025240 - 38025087
Alignment:
Q  19 ggatttcaaa-aaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatat 117  Q
    |||||||||| ||||||||| || ||||||||||| | |||||| || ||||  |||||||||| |||||||| |||  ||  | |||||| ||||| ||    
T  38025240 ggatttcaaagaaactcttgaaatctataaatacattatcctccatcgcaact-tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaat 38025142  T
Q  118 ctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgc 172  Q
    ||||||||||||  || ||| |||||||||||||||||||||| |||||| ||||    
T  38025141 ctgagaaattcagttttttcttcaaaacatttgaaatgggtttccgtttacctgc 38025087  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 38031668 - 38031551
Alignment:
Q  42 ctataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctgagaaattcatcttgttcatca 141  Q
    ||||||||||| |||||| |||||||||  |||||||||| |||||||| |||  ||  | |||||| ||||| ||| ||||||||||  || |||||||    
T  38031668 ctataaatacactgtccttcttcacaact-tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaatcagagaaattcagttttttcatca 38031570  T
Q  142 aaacatttgaaatgggttt 160  Q
    |||||||||||||||||||    
T  38031569 aaacatttgaaatgggttt 38031551  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 50912137 - 50912081
Alignment:
Q  116 atctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgc 172  Q
    ||||||||||||||  || ||| |||||| ||||||||||||||| |||||| ||||    
T  50912137 atctgagaaattcagttttttcttcaaaatatttgaaatgggtttccgtttacctgc 50912081  T

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Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 21605129 - 21604946
Alignment:
Q  12 agcaaagggatttcaaaaaactcttggaaactataaatacagtgtcctcct---tcacaacaatcacaaatcactcaagcaatcaatcttttatacattt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||    
T  21605129 agcaaagggatttcaaaaaactcttggaaactataaatacagtgtcctcctccttcacaacaatcacaaatcactcaagcaatcgatcttttatacattt 21605030  T
Q  109 atcttatatctgagaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgcagctattagacgggcttcat 192  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  21605029 atcttatatctgagaaattcatcttgttcttcaaaacatttgaaatgggtttccgtttacctgcagctattagacgggcttcat 21604946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 21607658 - 21607508
Alignment:
Q  21 atttcaaaaaactcttggaaactataaatacagtgtcctccttcacaacaatcacaaatcactcaagcaatcaatcttttatacatttatcttatatctg 120  Q
    ||||||||| |  |||| || ||||||||||| ||||||||||||||||  |||||||||| |||||||| |||  ||  | |||||| ||||| ||| |    
T  21607658 atttcaaaagatacttgaaatctataaatacactgtcctccttcacaact-tcacaaatcattcaagcaaacaaatttagaaacatttttcttaaatcag 21607560  T
Q  121 agaaattcatcttgttcatcaaaacatttgaaatgggttttcgtttatctgc 172  Q
    |||||||||  || ||| |||||||||||||||||||||| |||||| ||||    
T  21607559 agaaattcagttttttcttcaaaacatttgaaatgggtttccgtttacctgc 21607508  T

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