View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12046_low_2 (Length: 654)
Name: NF12046_low_2
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12046_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 18 - 636
Target Start/End: Original strand, 9172753 - 9173371
Alignment:
| Q |
18 |
cttgataaggttccgagtttttgttttgctgagaaaaagaaggaaagagaattagatgaattgagtgatgagagggtagaggctaggaatcctaggtggg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9172753 |
cttgataaggttccgagtttttgttttgctgagaaaaagaaggaaagagaattagatgaattgagtgatgagagggtagaggctaggaatcctaggtggg |
9172852 |
T |
|
| Q |
118 |
ctgtttatgggaaagggttggaggatgttaaggagtttttgaacagtgagagttatgatcctgctgctaagaaaattggaggtaattggtatttacaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9172853 |
ctgtttatgggaaagggttggaggatgttaaggagtttttgaacagtgagagttatgatcctgctgctaagaaaattggaggtaattggtatttacaatc |
9172952 |
T |
|
| Q |
218 |
tgttttggttttatttttgttaatgttctcgaggattattgtgacctatgtaataacttctagactctagattgaaggcgtgtcaggtgcccctgacaca |
317 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9172953 |
tgttttggttttatttttgttaatgttgtcgaggattattgtgacctatgtaataacttctagtctctagattgaaggcgtgtcaggtgcccctgacaca |
9173052 |
T |
|
| Q |
318 |
caatggtgttagacacaaacacacgtagttacgtttggtatctatgcgtcggtgtcgtatccgatgcatgtttctgtattgctgctttgtagattattgt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9173053 |
caatggtgttagacacaaacacacgtagttacgtttggtatctatgcgtcggtgtcgtatccgatgcatgtttctgtattgctgctttgtagattattgt |
9173152 |
T |
|
| Q |
418 |
gttgggtgtctgacacatattggtgtcagacacatacacatgtagttacctttggtatctacgtgtcagtgtcatatccggtatacttatctgtattgct |
517 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9173153 |
gttgggtgtctgacacatattggtgttagacacatacacatgtagttacctttggtatctacgtgtcagtgtcatatccggtatacttatctgtattgct |
9173252 |
T |
|
| Q |
518 |
gcttcatatattattgtttagggtgccgttcatgtgcctgacacgtatctgtgtcagacataggcacatgtagttacgtttggtttctatgtgtcaatgt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9173253 |
gcttcatatattattgtttagggtgccgttcatgtgcctgacacatatctgtgccagacataggcgcatgtagttacgtttggtttctatgtgtcaatgt |
9173352 |
T |
|
| Q |
618 |
catatccggtatatgtgtc |
636 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9173353 |
catatccggtatatgtgtc |
9173371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 416 - 637
Target Start/End: Complemental strand, 8653119 - 8652900
Alignment:
| Q |
416 |
gtgttgggtgtctgacacatattggtgtcagacacatacacatgtagttacctttggtatctacgtgtcagtgtcatatccggtatacttatctgtattg |
515 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
8653119 |
gtgtcgggtgtctgacatgtattggtgtcagacacataca--tgtagttacctttggtatctatgtgtcagtgtcatatccagtatatgtatctgtattg |
8653022 |
T |
|
| Q |
516 |
ctgcttcatatattattgtttagggtgccgttcatgtgcctgacacgtatctgtgtcagacataggcacatgtagttacgtttggtttctatgtgtcaat |
615 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| | |
|
|
| T |
8653021 |
ctgcttcatagattattgtgtaggatgccgttccggtgcctgacacgtatttgtgtcagacacaagcacatgtagttacgtttggtttctatgtgtcagt |
8652922 |
T |
|
| Q |
616 |
gtcatatccggtatatgtgtct |
637 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8652921 |
gtcatatccggtatatgtgtct |
8652900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 82 - 348
Target Start/End: Complemental strand, 8653396 - 8653127
Alignment:
| Q |
82 |
gtgatgagagggtagaggctaggaatcctaggtgggctgtttatgggaaagggttggaggatgttaaggagtttttgaacagtgagagttatgatcctgc |
181 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||||||||||||| ||| || ||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
8653396 |
gtgatgagagggtagtgcctaggaatcctagatgggctgtttatgggcgaggtttcgaggatgttaatgagtttttgaatagtgagagttatgaccctgc |
8653297 |
T |
|
| Q |
182 |
tgct---aagaaaattggaggtaattggtatttacaatctgttttggttttatttttgttaatgttctcgaggattattgtgacctatgtaataacttct |
278 |
Q |
| |
|
|||| | ||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| | | |||||||||| |||||||||||| ||||| | |
|
|
| T |
8653296 |
tgctgctatgaaaactggaggtaattggtatttacaatctgttttggttttatttctgttgatgctgttgaggattattatgacctatgtaacaactttt |
8653197 |
T |
|
| Q |
279 |
agactctagattgaaggcgtgtcaggtgcccctgacacacaatggtgttagacacaaacacacgtagtta |
348 |
Q |
| |
|
|| |||||||||||| | ||| ||||||| |||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
8653196 |
agtctctagattgaatgtgtgccaggtgcgcctgacacgtaatggtgttagacacaaacacatgtagtta |
8653127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 342 - 531
Target Start/End: Complemental strand, 8653078 - 8652878
Alignment:
| Q |
342 |
gtagttacgtttggtatctatgcgtcggtgtcgtatccgatgcatgtttctgtattgctgctttgtagattattgtgttgg-----------gtgtctga |
430 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||| ||||| | |||| ||||||||||||||| ||||||||||||| || ||| |||| |
|
|
| T |
8653078 |
gtagttacctttggtatctatgtgtcagtgtcatatccagtatatgtatctgtattgctgcttcatagattattgtgtaggatgccgttccggtgcctga |
8652979 |
T |
|
| Q |
431 |
cacatattggtgtcagacacatacacatgtagttacctttggtatctacgtgtcagtgtcatatccggtatacttatctgtattgctgcttcatatatta |
530 |
Q |
| |
|
||| |||| |||||||||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||| | ||| | ||||||||||||| |||| |
|
|
| T |
8652978 |
cacgtatttgtgtcagacacaagcacatgtagttacgtttggtttctatgtgtcagtgtcatatccggtatatgtgtctttgttgctgcttcatagatta |
8652879 |
T |
|
| Q |
531 |
t |
531 |
Q |
| |
|
| |
|
|
| T |
8652878 |
t |
8652878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 531
Target Start/End: Original strand, 9173162 - 9173394
Alignment:
| Q |
310 |
ctgacacacaatggtgttagacacaaacacacgtagttacgtttggtatctatgcgtcggtgtcgtatccgatgcatgtttctgtattgctgctttgtag |
409 |
Q |
| |
|
|||||||| | |||||||||||||| ||||| |||||||| ||||||||||| | ||| ||||| |||||| | | | ||||||||||||||| || |
|
|
| T |
9173162 |
ctgacacatattggtgttagacacatacacatgtagttacctttggtatctacgtgtcagtgtcatatccggtatacttatctgtattgctgcttcatat |
9173261 |
T |
|
| Q |
410 |
attattgtgttgggtgtc-----------tgacacatattggtgtcagacacatacacatgtagttacctttggtatctacgtgtcagtgtcatatccgg |
498 |
Q |
| |
|
|||||||| | ||||| | |||||||||| ||| |||||| | | ||||||||||| |||||| |||| |||||| |||||||||||| |
|
|
| T |
9173262 |
attattgtttagggtgccgttcatgtgcctgacacatatctgtgccagacataggcgcatgtagttacgtttggtttctatgtgtcaatgtcatatccgg |
9173361 |
T |
|
| Q |
499 |
tatacttatctgtattgctgcttcatatattat |
531 |
Q |
| |
|
|||| | || || ||||||||||||| ||||| |
|
|
| T |
9173362 |
tatatgtgtccgtgttgctgcttcatagattat |
9173394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 639
Target Start/End: Complemental strand, 8653082 - 8653026
Alignment:
| Q |
583 |
acatgtagttacgtttggtttctatgtgtcaatgtcatatccggtatatgtgtctgt |
639 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
8653082 |
acatgtagttacctttggtatctatgtgtcagtgtcatatccagtatatgtatctgt |
8653026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 414
Target Start/End: Complemental strand, 8652969 - 8652878
Alignment:
| Q |
323 |
gtgttagacacaaacacacgtagttacgtttggtatctatgcgtcggtgtcgtatccgatgcatgtttctgtattgctgctttgtagattat |
414 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||| |||||| ||| ||||| |||||| | |||| ||| | ||||||||| |||||||| |
|
|
| T |
8652969 |
gtgtcagacacaagcacatgtagttacgtttggtttctatgtgtcagtgtcatatccggtatatgtgtctttgttgctgcttcatagattat |
8652878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University