View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12046_low_3 (Length: 616)
Name: NF12046_low_3
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12046_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Complemental strand, 36490548 - 36489946
Alignment:
| Q |
1 |
gtatggctttatcagacgagttgtatctgcaatctccttatgaatacattcatgagattctcatttattatttaaggaaaaactgactctaattatggaa |
100 |
Q |
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| T |
36490548 |
gtatggctttatcagacgagttgtatctgcaatctccatatgaatacattcacgagattctcatttattatttaaggaaaaactgactctaattatggaa |
36490449 |
T |
|
| Q |
101 |
gcatgataaagcattataattaagttaaacattcggatattactgagttcacagaaatagctccttgtgattttgtattaatagttagtcatacaaatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36490448 |
gcatgataaagcattataattaagttaaacattcggatattactgagttcaaagaaatagatccttgtgattttgtattaatagttagtcatacaaatta |
36490349 |
T |
|
| Q |
201 |
attgaaaaatcatgtgtgagtataggttataaattgcatgaaggaaggaagaaagaaatgcagacagaacagaacacacataaagaaactccattgtctg |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36490348 |
attgaaaaatcatgtgtgagta--ggttataaattgcatgaaggaaggaagaaagaaatgcagacagaacagaacacacataaagaaactccattgtctg |
36490251 |
T |
|
| Q |
301 |
ttggagaaaggttcgaaaaacttcgagcaaatcaatatatgcgcatccttctcttgtttagtaattttattccactgtgacttggatctccacttatctg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36490250 |
ttggagaaaggttcgaaaaacttcgagcaaatcaatatatgcgcatccttcttttgtttagtaattttattccactgtgacttggatctccacttatccg |
36490151 |
T |
|
| Q |
401 |
ataatgtgttattaactttttctttacttaaaattctcacagtcctgatgatcgaggaactaataa---ttttatttttatctacattggatatttttaa |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
36490150 |
ataatgtgttattaactttttctttacttaaaattctcacagtcctgatgatcgaggaactaataatatttttttttttatctacattggatatttttaa |
36490051 |
T |
|
| Q |
498 |
ttaaatgttcagtcccataaaactgtagaaaagtgtagcacaaagagaaagaacattgcagatatatcaccttcatattaattatatatctaactatcaa |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36490050 |
ttaaatgttcagtcccataaaactgtagaaaagtgtagcacaaagagatagaacattgcagatatatcaccttcatattaattatatatctaactatcaa |
36489951 |
T |
|
| Q |
598 |
atatg |
602 |
Q |
| |
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||||| |
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| T |
36489950 |
atatg |
36489946 |
T |
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