View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12046_low_4 (Length: 443)
Name: NF12046_low_4
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12046_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 41570416 - 41570116
Alignment:
| Q |
10 |
gcagagacagtggaggcgatgattagtaacacggcgaggagtgagaggaaaatgatcttcttctttgaagatctaggtttggtagtgtttattataggtt |
109 |
Q |
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| T |
41570416 |
gcagagatagtggaggcgatgattagtaacacggcgaggagtgagaggaaaatgatcttcttctttgaagatctaggtttggtagtgtttattataggtt |
41570317 |
T |
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| Q |
110 |
gggagggtgtcgagccaccagggtcggatagtcctaaccttccgtactccattgtgaagtgtgaagtgttaagtgaaaaaataagagttgaggaagtaat |
209 |
Q |
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| T |
41570316 |
gggagggtgtcgagccaccagggtcggatagtcctaaccttccgtactccattgtgaagtgtgaagtgttaagtgaaaaaataagag-tgaggaagtaat |
41570218 |
T |
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| Q |
210 |
ggacttatagaagtagtagtagtttgctaattatgaagtttgttgtgatgagtaatgtgtaatgaatgatagcttttttatataaatgacggtgcttagt |
309 |
Q |
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| T |
41570217 |
ggacttatagaagtagtagtagtttgctaattatgaagtttgttgtgatgagtaatgtgtaatgaatgatagc-tttttatataaatgacggtgcttagt |
41570119 |
T |
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| Q |
310 |
tag |
312 |
Q |
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||| |
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| T |
41570118 |
tag |
41570116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 306 - 425
Target Start/End: Complemental strand, 41570070 - 41569954
Alignment:
| Q |
306 |
tagttagtagtactagtaatctagtagtatagtgaaagagtgaagaacagtgtaatgtgtatgtggttgtttttagtgaggttggtgtgaagtctatgtc |
405 |
Q |
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| T |
41570070 |
tagttagtagtactagtaatctagta---tagtgaaagagtgaagaacagtgtaatgtgtatgtggttgtttttagtgaggttggtgtgaagtctatgtc |
41569974 |
T |
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| Q |
406 |
tactgaggaatgagctggct |
425 |
Q |
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| T |
41569973 |
tactgaggaatgagctggct |
41569954 |
T |
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