View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12046_low_5 (Length: 405)
Name: NF12046_low_5
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12046_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 389
Target Start/End: Complemental strand, 40064337 - 40063954
Alignment:
| Q |
9 |
agcaaaggtgataggattgatattgatttgaccaacnnnnnnngagtttattatttatttgtaatgatttaaacgtcagcttgtgccaagtaacaatctt |
108 |
Q |
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| T |
40064337 |
agcaaaggtgataggattgatatcgatttgaccaaaaaaaaaagagtttattatttatttgtaatgatttaaacgtctgcttgtgccaagtaacaatctt |
40064238 |
T |
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| Q |
109 |
gagatacaagttagatgtt---tgtaaatactttgacgctcaagtagatgtattgaaatgatagaggtaatatacattgtgttgtggtttaatgacctat |
205 |
Q |
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| T |
40064237 |
gagatacaagttagatgttgtttgtaaatacttcgaagctcaagtagaggtattgaaatgatagaggtgatatacattgtgttgtggtttaatgacctat |
40064138 |
T |
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| Q |
206 |
atatacggttgagaaaggagttattttcgtagtcgttgagacgcgattacggaaggtggatgttagtattgaaattgtcgttctcgttctgcatttatgg |
305 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |
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| T |
40064137 |
atatacaattgagaaaggagttattttcgtagtcgttgagacgcgattacggaaggtggatattagtattgaaattgtcgttcttgttttgcatttatgg |
40064038 |
T |
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| Q |
306 |
atctgcaatgatcctaagcttcctaatctttaaggatgttggaccattagagcatagttgagggtggtgccttgatgtcatatg |
389 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40064037 |
atctgcaatgatcctaagctccctaatctttaaggatgttggaccattagagcatagttgagggtggtgccttgatgtcatatg |
40063954 |
T |
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