View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12046_low_6 (Length: 263)
Name: NF12046_low_6
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12046_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 31222374 - 31222205
Alignment:
| Q |
16 |
tttccagcaaaaccttaatgggtattcatgatctctatctccgaaagccatgacatgaagattctcaactttggtaccatcgaaaatgtccttcacgtag |
115 |
Q |
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| T |
31222374 |
tttccaacaaaaccttaatgggtattcatgatctctatctcccaaagccatgacatgaagattctcaactttggtaccatcgaaaatgtccttcacgtag |
31222275 |
T |
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| Q |
116 |
gacaagacaagcctcacgttgttgttcctgtcgacaatatcgataatgtttctcctcggaactctacggt |
185 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31222274 |
gacaagacaagtctcacgttgttgttcctgtcgacaatatcgataatgtttctcctcggaactctacggt |
31222205 |
T |
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