View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12046_low_7 (Length: 260)
Name: NF12046_low_7
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12046_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 47645347 - 47645590
Alignment:
| Q |
1 |
tctgagagtaacctatggcttttgccaaatcctaagatgtttgatattgataaatctttagttactactccatatagaaactattcagcacatgatatgg |
100 |
Q |
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| T |
47645347 |
tctgagagtaacctatggcttttgccaaatcctaagatgtttgatattgataaatctttagttactactccatatagaaactactcagcacatgatatga |
47645446 |
T |
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| Q |
101 |
ttgattttcttaaagatattggttttcctgaaggggtttatccttatgaaactcgcattttacctttgatagcgaaaatagatgcaccagaagtggctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47645447 |
ttgattttcttaaagatattggttttcctgaaggggtttatccttatgaaactcgcattttacctttgatagcgaaaatagatgcaccagcagtggctat |
47645546 |
T |
|
| Q |
201 |
gacttgtattataggaaagggtgtgaagactccagaggaattgt |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47645547 |
gacttgtattataggaaagggtgtgaagactccagaggaattgt |
47645590 |
T |
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