View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12046_low_8 (Length: 250)
Name: NF12046_low_8
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12046_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 21097849 - 21097614
Alignment:
| Q |
11 |
cataggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattttcttccaatcttaggactataactacatgta |
110 |
Q |
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| T |
21097849 |
cataggttcacaaccataagaccaatcattaggattgttcattctataccctggaatacaagagcattttcttccaatcttaggactataactacatgta |
21097750 |
T |
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| Q |
111 |
ctattagctccacaaattccatgaactaaacaagtacctgtaaaggcttgccatgaaacataccaattctgtgacacattagttctgctatacactctca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21097749 |
ctattagctccacaaattccatgaactaaacaagtacctgtaaaggcttgccatgaaacataccaattctgtgacacattcgttctgctatacactctca |
21097650 |
T |
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| Q |
211 |
caacaccatcagaatccaatttcatcattctttgca |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
21097649 |
caacaccatcagaatccaatttcatcattctttgca |
21097614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 21107468 - 21107235
Alignment:
| Q |
11 |
cataggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattttcttccaatcttaggactataactacatgta |
110 |
Q |
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|||||| ||||||||||||||||||||| || | || |||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |
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| T |
21107468 |
cataggctcacaaccataagaccaatcactatggttcttcactctataccctggaatacaagaacattttcttccatgcttaggattataactacatgtg |
21107369 |
T |
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| Q |
111 |
ctattagctccacaaattccatgaactaaacaagtacctgtaaaggcttgccatgaaacataccaattctgtgacacattagttctgctatacactctca |
210 |
Q |
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|||||| |||||||||| |||||| ||| |||| ||| || |||||||||||||||||||||||| |||||||||||| |||| |||||||| || | |
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| T |
21107368 |
ctattatctccacaaatcccatgagctatgcaagcaccataaatggcttgccatgaaacataccaattttgtgacacattaattctactatacaccctta |
21107269 |
T |
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| Q |
211 |
caacaccatcagaatccaatttcatcattctttg |
244 |
Q |
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| T |
21107268 |
aattaccatcagaatccattttcattcttctttg |
21107235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 21112405 - 21112471
Alignment:
| Q |
13 |
taggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattt |
79 |
Q |
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|||||||||| |||||||||||||||||| | || |||||| ||||||| || | |||||||||||| |
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| T |
21112405 |
taggttcacatccataagaccaatcattatggttcttcattttataccccggcaaacaagagcattt |
21112471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 21131366 - 21131432
Alignment:
| Q |
14 |
aggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcatttt |
80 |
Q |
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||||||||||||||||||||||||| || | || |||| | |||| ||||| | ||||||||||||| |
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| T |
21131366 |
aggttcacaaccataagaccaatcactatggttcttcactttatatcctggcaaacaagagcatttt |
21131432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 18659525 - 18659593
Alignment:
| Q |
11 |
cataggttcacaaccataagaccaatcattaggatttttcattctataccctggaatacaagagcattt |
79 |
Q |
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|||||||||||||||| |||| |||||||| | || |||| | |||||||||| | |||||||||||| |
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| T |
18659525 |
cataggttcacaaccagaagagaaatcattatggttcttcactttataccctggcaaacaagagcattt |
18659593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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