View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12046_low_9 (Length: 237)

Name: NF12046_low_9
Description: NF12046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12046_low_9
NF12046_low_9
[»] chr7 (6 HSPs)
chr7 (1-222)||(21097320-21097541)
chr7 (2-222)||(21106939-21107159)
chr7 (119-223)||(21112829-21112933)
chr7 (119-224)||(21131789-21131894)
chr7 (119-223)||(18659951-18660055)
chr7 (119-175)||(21124223-21124279)
[»] chr4 (1 HSPs)
chr4 (119-223)||(39130843-39130947)


Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21097541 - 21097320
Alignment:
Q  1 ctgcatttctgctactattgaaattagatctgccaacatcccaacttagcagccaaggacttggccaataagagctagaaacatcgcgaccatcgtaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21097541 ctgcatttctgctactattgaaattagatctgccaacatcccaacttagcagccaaggacttggccaataagagctagaaacatcgcgaccgtcgtaatg 21097442  T
Q  101 aagaccgagaatgttttcatcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21097441 aagaccgagaatgttttcatcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaaga 21097342  T
Q  201 ggttgacctggaaggagagtat 222  Q
    ||||||||||||||||||||||    
T  21097341 ggttgacctggaaggagagtat 21097320  T

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Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 21107159 - 21106939
Alignment:
Q  2 tgcatttctgctactattgaaattagatctgccaacatcccaacttagcagccaaggacttggccaataagagctagaaacatcgcgaccatcgtaatga 101  Q
    |||| ||||||||| |||||||||||  |||||||| | | || |||| ||||||||  ||||||||||||||||||||| |||  | ||||| ||||||    
T  21107159 tgcaattctgctaccattgaaattagccctgccaacttgcgaaattagaagccaaggttttggccaataagagctagaaatatcagggccatcataatga 21107060  T
Q  102 agaccgagaatgttttcatcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagag 201  Q
    ||||| ||||  ||| ||||||||||| ||||| | |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  21107059 agaccaagaacatttgcatcatcaaagtagaacttgtagaagccagtagaatgattactctcacttcttgaagctacaagctttgtatatcttgtaagag 21106960  T
Q  202 gttgacctggaaggagagtat 222  Q
    |||||||||||||||||||||    
T  21106959 gttgacctggaaggagagtat 21106939  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 21112829 - 21112933
Alignment:
Q  119 atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga 218  Q
    |||||||||||| ||| |||| |||||||||||||||||||| |  ||| ||||||| ||||| ||||||||||| || |||||||||   |||||||||    
T  21112829 atcatcaaagaacaacttataaaagccagaagaatgattactatggcttcttgaagaaacaaggtttgtatatctagtgagaggttgattaggaaggaga 21112928  T
Q  219 gtatt 223  Q
    |||||    
T  21112929 gtatt 21112933  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 21131789 - 21131894
Alignment:
Q  119 atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga 218  Q
    ||||||||||||  || |||||||||||||||||||||||||||  ||| ||||||| ||||| ||||| ||||| || || ||||||   |||||||||    
T  21131789 atcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattaggaaggaga 21131888  T
Q  219 gtattg 224  Q
    ||||||    
T  21131889 gtattg 21131894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 18659951 - 18660055
Alignment:
Q  119 atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga 218  Q
    |||||||||||| ||| ||||||||||||||||||||||||| |  ||| ||||||| ||||| ||| | ||||| || |||||||||   |||||||||    
T  18659951 atcatcaaagaaaaacttatagaagccagaagaatgattactttggctttttgaagaaacaagttttatgtatctagtgagaggttgattaggaaggaga 18660050  T
Q  219 gtatt 223  Q
    |||||    
T  18660051 gtatt 18660055  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 21124223 - 21124279
Alignment:
Q  119 atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaaga 175  Q
    ||||||||||||  || |||||||||||||||||||||||||||  ||| |||||||    
T  21124223 atcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaaga 21124279  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 223
Target Start/End: Complemental strand, 39130947 - 39130843
Alignment:
Q  119 atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga 218  Q
    ||||||||| || ||| ||||||||||||||||||||||||||| |||| |||| ||  |||| ||||| ||||| || |||||||||   |||||||||    
T  39130947 atcatcaaaaaacaacttatagaagccagaagaatgattactctgacttcttgaggaaccaagttttgtgtatctagtgagaggttgattaggaaggaga 39130848  T
Q  219 gtatt 223  Q
    |||||    
T  39130847 gtatt 39130843  T

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