View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12047_high_1 (Length: 492)
Name: NF12047_high_1
Description: NF12047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12047_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 41603028 - 41603504
Alignment:
| Q |
1 |
tcaaataagtcaaaaatctatagaggagaaacaattgtgaaaaggcattagaatgaaataatgcaggtgctagacatgtcaaaagaaagaaattatatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41603028 |
tcaaataagtcaaaaatctatagaggagaaaaaattgtgaaaaggcattagaatgaaataatgcaggtgctagacatgtcaaaagaaagaaattatatga |
41603127 |
T |
|
| Q |
101 |
ctatatgcaacaggatgatgatttcactaaaactaaacatcaacaaataacaaaacttggtataacaagttctaagcatagcaaaagattcctagaactt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41603128 |
ctatatgcaacaggatgatgatttcactaaaactaaacatcaataaataacaaaacttggtataacaagttctaagcatagcaaaagattcctagaactt |
41603227 |
T |
|
| Q |
201 |
gaacaagaagaacaaacaagtttagaccaaagagaatggatcagttatatacataccctgtctgcaaatagatttttctcattctcattcctgaagagtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41603228 |
gaacaagaagaacaaacaagtttagaccaaagagaatggatcagttatatacataccctgtctgcaaatagatttttctcattctcattcctgaagagtg |
41603327 |
T |
|
| Q |
301 |
ctagctggaattcttcctagaaataataatatttttgtagaagagattaggcacctgaattaagggcattttatctaaactaattnnnnnnntttaaaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41603328 |
ctagctggaattcttcctagaaataataatatttttgtagaagagattaggcacctgaattaagggcattttatctaaactaattaaaaaactttaaaag |
41603427 |
T |
|
| Q |
401 |
aaaatacttaactaaccttatgaataagaccatcttcaataattgaattgcttaacttcaaaaagagttcatataac |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41603428 |
aaaatacttaactaaccttatgaataagaccatcttcaataattgaattgcttaacttcaaaaagagttcatataac |
41603504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University