View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12047_high_3 (Length: 265)
Name: NF12047_high_3
Description: NF12047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12047_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 36288633 - 36288389
Alignment:
| Q |
7 |
caaaaagttgcatccttcccaattccacttccaccgctcgccggagctttcatacctggaagatatgtatcagttggatcttcaaaactttgccaaatct |
106 |
Q |
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| T |
36288633 |
caaaaagttgcatccttcccaattccatttccaccgctcaccggagctttcatacctggaagatatgtatcagttggatcttcaaaactttgccaaatct |
36288534 |
T |
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| Q |
107 |
ctttgttattttctctatctgaaagaataaggtttccatcattatgaagaacagcttgtgaattatttatcgaaatcttcgatgcgttgcttgaccaaac |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288533 |
ctttgttattttctctatctgaaagaataaggtttccattattatgaagaacagcttgtgaattatttatcgaaatcttcgatgcgttgcttgaccaaac |
36288434 |
T |
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| Q |
207 |
ctcgttgttttgtccatcaagaacaactaagttaccatcattttt |
251 |
Q |
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| T |
36288433 |
ctcgttgttttgtccatcaagaacaactaagttaccatcattttt |
36288389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 12096941 - 12097184
Alignment:
| Q |
7 |
caaaaagttgcatccttcccaattccacttccaccgctcgccggagctttcatacctggaagatatgtatcagttggatcttcaaaactttgccaaatct |
106 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12096941 |
caaaaagtagcatccttcccaattccacttccaccactcgccgaaactttcatacctggaagatatgtatcagttggatcttcaaagctttgccaaatct |
12097040 |
T |
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| Q |
107 |
ctttgttattttctctatctgaaagaataaggtttccatcattatgaagaacagcttgtgaattatttatcgaaatcttcgatgcgttgcttgaccaaac |
206 |
Q |
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| T |
12097041 |
ctttgttattttctctatcagaaagaataaggttcccatcattaagaagaacagcttgtgaattatttatcgaaattttcgatatattacttg-ccaaac |
12097139 |
T |
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| Q |
207 |
ctcgttgttttgtccatcaagaacaactaagttaccatcattttt |
251 |
Q |
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| T |
12097140 |
ctcgttgttttgtccatcaagaactaccaagttaccatcattttt |
12097184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 21933250 - 21933201
Alignment:
| Q |
54 |
tttcatacctggaagatatgtatcagttggatcttcaaaactttgccaaa |
103 |
Q |
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|||||||||||||||| ||||||| ||||||| | ||||||||||||||| |
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| T |
21933250 |
tttcatacctggaagaaatgtatctgttggatttgcaaaactttgccaaa |
21933201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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