View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12047_low_4 (Length: 260)
Name: NF12047_low_4
Description: NF12047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12047_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 19294189 - 19293941
Alignment:
| Q |
12 |
agagaggagggaatttagttattgttgctaacatgtatgctgaagtaggaaattgggagaaagcggcgaatgtgaggagggtaatgagagatggagggtt |
111 |
Q |
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| T |
19294189 |
agagaggagggaatttagttattgttgctaacatgtatgctgaagtaggaaattgggagaaagcggcgaatgtgaggagggtaatgagagacggagggtt |
19294090 |
T |
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| Q |
112 |
gaagaaaatggctggagagagttgtgttgatttgggtggttccatgtataggttctttgctgggcatgattctcgcccggatttgatgcctgtctatgat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19294089 |
gaagaaaatggctggagagagttgtgttgatttgggtggttccatgtataggttctttgctgggcatgattctcgcccggatttgatgcctgtctatgat |
19293990 |
T |
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| Q |
212 |
ctgctagacacattgaacctgcacttgaagatggttcactagttttatt |
260 |
Q |
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| T |
19293989 |
ctgctagacgcattgaacctgcacttgaagatggttcactagttttatt |
19293941 |
T |
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