View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12047_low_6 (Length: 243)
Name: NF12047_low_6
Description: NF12047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12047_low_6 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: scaffold1075 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2766 - 2537
Alignment:
| Q |
1 |
ccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttgact |
100 |
Q |
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| T |
2766 |
ccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttgact |
2667 |
T |
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| Q |
101 |
ggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttccagatgcattgacttagaagctctta |
200 |
Q |
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| T |
2666 |
ggtaaaagtaagagggattttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttagaagctctta |
2567 |
T |
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| Q |
201 |
agttgaaaggaacgttgaagagtcatgatg |
230 |
Q |
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| T |
2566 |
agttgaaaggaacgttgaagagtcatgatg |
2537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17006331 - 17006560
Alignment:
| Q |
1 |
ccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttgact |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17006331 |
ccatgttgatgctcgaagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccgacaatttttactttgact |
17006430 |
T |
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| Q |
101 |
ggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttccagatgcattgacttagaagctctta |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
17006431 |
ggtaaatgtaagagggaatttttaacaattttaaagaatatcacagtgccggatggttattcaagcaacatttctagatgcattgacttggaagctctta |
17006530 |
T |
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| Q |
201 |
agttgaaaggaacgttgaagagtcatgatg |
230 |
Q |
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| T |
17006531 |
agttgaaaggaatgttgaagagtcatgatg |
17006560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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