View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12047_low_9 (Length: 238)
Name: NF12047_low_9
Description: NF12047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12047_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 24459042 - 24459179
Alignment:
| Q |
1 |
acgaactaagaaagtaacattgaaatcagagaaaagc-taagttcataaccaaagataacttttgtgtttccctc---nnnnnnnnnngataacttccgt |
96 |
Q |
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| T |
24459042 |
acgaactaagaaagtaacattgaaatcagagaaaagcttaagttcataactaaagataacttttgtgtttccctcaaaaaaaaaaaaagataacttccgt |
24459141 |
T |
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| Q |
97 |
gtttatttctaattcaagttttaaatcacctggaatta |
134 |
Q |
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| T |
24459142 |
gtttatttctaattcaagttttaaatcacctggaatta |
24459179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 24459206 - 24459270
Alignment:
| Q |
160 |
aatgataaaactaagaaatcataaattccatagctaggtattgcaaactattaacaatgcagaat |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24459206 |
aatgataaaactaagaaatcataaattccatagctaggtattgcaaactattaacaacgcagaat |
24459270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 24477363 - 24477427
Alignment:
| Q |
160 |
aatgataaaactaagaaatcataaattccatagctaggtattgcaaactattaacaatgcagaat |
224 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
24477363 |
aatgataaaactaagaaatcataaatttcagagctaggtattgcaaactattaacaatgcagaat |
24477427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 24477206 - 24477336
Alignment:
| Q |
1 |
acgaactaagaaagtaacattgaaatcagagaaaagc-taagttcataaccaaagataacttttgtgtttccctcnnnnnnnnnngataacttccgtgtt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||| |||||||| ||||| |
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| T |
24477206 |
acgaactaagaaagtaacattgaaatcagagaaaagcttaagttcataattagagataac--ttgtgtttccctc--aaaaaacagataacttttgtgtt |
24477301 |
T |
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| Q |
100 |
tatttctaattcaagttttaaatcacctggaatta |
134 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
24477302 |
catttctaattcaagttttaaatcaactggaatta |
24477336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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