View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12048_high_11 (Length: 295)
Name: NF12048_high_11
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12048_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 31456602 - 31456827
Alignment:
| Q |
12 |
atcaaaatattggtttgcagtctaattgtccttacttcatcaggaatgagtttcttagagagagattatatgatacactatatacacgtatgtttggttc |
111 |
Q |
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| T |
31456602 |
atcaaaatattggtttgtagtctaattgtccttacttcatcaggaatgag----------agagattatatgatacactatatacacgtatgtttggttc |
31456691 |
T |
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| Q |
112 |
tattgtggaagaactaaaattgtttctagttttgaatgttcttaagtataatcgaagaattggttctaacttaaaactaaaatctgtagttttttcttct |
211 |
Q |
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| T |
31456692 |
tattgtagaagaactaaaattgtttctagttttgaatgttcttaagtataatccaagaattggttctaacttaaaactaaaatctttagttttttcttct |
31456791 |
T |
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| Q |
212 |
ccaattaatttttagatcagataaagaggttacatg |
247 |
Q |
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| T |
31456792 |
ccaattaatttttagatcacataaagaggttacatg |
31456827 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 23979126 - 23979070
Alignment:
| Q |
169 |
aattggttctaacttaaaactaaaatctgtagttttttcttctccaattaattttta |
225 |
Q |
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| T |
23979126 |
aattgattataacttaaaactaaaatctgtagcatttgattctacaattaattttta |
23979070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 49084530 - 49084598
Alignment:
| Q |
82 |
tgatacactatatacacgtatgtttggttctattgtggaagaactaaaattgtttctagttttgaatgt |
150 |
Q |
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| T |
49084530 |
tgatgcactatatacacgtatgtttggttctactgtggaggagctaaaattgtttctagttttgaatgt |
49084598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 23869979 - 23870030
Alignment:
| Q |
244 |
catgcaggggtggccctcagggcgggccggaggggcagcagcccagggcacc |
295 |
Q |
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| T |
23869979 |
catgcaggggtggccctgagggcgggctcgaggggcgacagcccagggcacc |
23870030 |
T |
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