View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12048_high_14 (Length: 249)
Name: NF12048_high_14
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12048_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 41918027 - 41918257
Alignment:
| Q |
1 |
atgttagaaagactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaatatttcaaagattc |
100 |
Q |
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| T |
41918027 |
atgttagaaagactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaatatttcaaagattc |
41918126 |
T |
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| Q |
101 |
aaaggtttatcagggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaaatgtcttcattgtca |
200 |
Q |
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| T |
41918127 |
aaaggtttatcagggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaaatgtcttcattgtca |
41918226 |
T |
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| Q |
201 |
ggtttatgtctagttgagagtaggagaattg |
231 |
Q |
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| T |
41918227 |
ggtttatgtctagttgagagtaggagaattg |
41918257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1686903 - 1687133
Alignment:
| Q |
1 |
atgttagaaagactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaatatttcaaagattc |
100 |
Q |
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|||||||||||| ||| |||| | |||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||| | ||||||| || | |
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| T |
1686903 |
atgttagaaagagtgctaagacttgtgagtgtcaacgaccattatttgttgatgatggaaattccatctctttaccatttttgttaaatttcaacaatac |
1687002 |
T |
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| Q |
101 |
aaaggtttatcagggtggatttgaaaattcaactataactaatgaatctggcatcgtatacaattcggtacaaagttatcagaaaatgtcttcattgtca |
200 |
Q |
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| T |
1687003 |
aaagattgagaagagtggatttgagagttcaaccataactaatgtatctgctatcgaatacaattcactacaaagttaccaaaaaatgacttcattgtca |
1687102 |
T |
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| Q |
201 |
ggtttatgtctagttgagagtaggagaattg |
231 |
Q |
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| T |
1687103 |
tctttatgtcttgttgagaatagaagaattg |
1687133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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