View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12048_high_5 (Length: 523)
Name: NF12048_high_5
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12048_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Original strand, 29650283 - 29650779
Alignment:
| Q |
18 |
tgaagatcctgctaaagcgtttgtgtgttattattgttttcagggtgtggaaaccatctatctctgtatagggacacacttcatagaacagccatatcct |
117 |
Q |
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| T |
29650283 |
tgaagatcctgctaaagcgtttgtgtgttattattgttttcagggtgtggaaaccatctatttctgtatagggacacacttcatagaacagccatatcct |
29650382 |
T |
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| Q |
118 |
aagatcttcgtttattagccacgtatgcatttatctgcatttactgttacaaatctcaatactttctagctttttcctgcaagttctcgtgattacataa |
217 |
Q |
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| T |
29650383 |
aagatcttcgtttattagccacgtatgcatttatctgcatttactgttacaaatctcaatactttctagctttttcctgcaagttctcgtgattacataa |
29650482 |
T |
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| Q |
218 |
actaaaacaacgaaaagtgagactgtaaaatgcttttgattgtcgttgtttttgttgtttatctaattagaagaacttgaagacaaaagctggaaaatat |
317 |
Q |
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| T |
29650483 |
actaaaacaacgaaaagtgagactgtaaaatgcttttgattgtcgttgtttttgttgtttatctaattagaagaacttgaagacaaaagctggaaaatat |
29650582 |
T |
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| Q |
318 |
tacaaatcctcatgtaaaatgaaagcaagtcatgtttctcctcccttgccaagaggttatgaaagaggtaagtggagaaaaatattcatcatctatgaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29650583 |
tacaaatcctcatgtaaaatgaaagcaagtcatgtttctcatcccttgccaagaggttatgaaagaggtaagtggagaaaaatattcatcatctatgaac |
29650682 |
T |
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| Q |
418 |
ataaaagaaatgcaacagcacattattttcatcacattctttatgattgattcacttttctactcgggttatttaacatcttgcggcttcatctcat |
514 |
Q |
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| T |
29650683 |
ataaaagaaatgcaacagcacattattttcatcacattctttatgattgattcacttttctactcgggttatttaacatcttgcggcttcatttcat |
29650779 |
T |
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