View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12048_high_6 (Length: 503)
Name: NF12048_high_6
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12048_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Complemental strand, 24068252 - 24067781
Alignment:
| Q |
20 |
aacatttccctcatcaacattgatatcaacaacaactgagtcaccttcctttatttctttccttaacatcttttcagccaatgtatcttccaaaaatctt |
119 |
Q |
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| T |
24068252 |
aacatttccctcatcaacattgatatcaacaacaactgagtcaccttcctttatttctttccttaacatcttttcagccaatgtatcttccaaaaatctt |
24068153 |
T |
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| Q |
120 |
gcaatagtccttcttaatggtcttgcaccatagctagggttatatccattttgaatcacataatccctaaacctacatgttaatgaaagatgtatatctt |
219 |
Q |
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| T |
24068152 |
gcaatagtccttcttaatggtcttgcaccatagctagggttatatccattttgaatcacataatccctaaacctacatgttaaagaaagatgtatatctt |
24068053 |
T |
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| Q |
220 |
taaccatcattttttcacaaacttctctcaacattatatttgcaatttgttccacttccaattttgttagttctttaaaaacaattatctcatcaagcct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24068052 |
taaccatcattttttcacaaacttctctcaacattatatttgcaatttgttccacttccaattttgttagttctttaaaaacaattatctcatcaagcct |
24067953 |
T |
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| Q |
320 |
attcaaaaactctggtctaaaatgattcttcagctcctccataaccaaattctttttatgatcaataatttgcatagtttcattatttgtcccttcaatg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24067952 |
attcaaaaactctggtctaaaatgattcttcagctcctccataaccaaattctttttatgatcaataatttgcatagtttcattatttgtcccttcaatg |
24067853 |
T |
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| Q |
420 |
atgttgttaccaagattgctagtcattataataagtgtgcttttaaagtcaactgtttgaccttttccatct |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24067852 |
atgttgttaccaagattgctagtcattataataagtgtgcttttaaagtcaactgtttgaccttttccatct |
24067781 |
T |
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