View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12048_low_1 (Length: 988)
Name: NF12048_low_1
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12048_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-167; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 511 - 867
Target Start/End: Original strand, 12754859 - 12755216
Alignment:
| Q |
511 |
ttgatattaaaggtgtgtctggtgtctaacaagtatcggtagataacactaacacaacacagatacaattactaatacaaaatcacaggcaacccagatc |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12754859 |
ttgatattaaaggtgtgtctggtgtctaacaagtatcggtagataacactaacacaacacagatacaattactaatacaaaatcacaggcaacccagatc |
12754958 |
T |
|
| Q |
611 |
aaatgtgtgtttggtgtttaacatgtgtcggtgatcaacaccaacacaatagtaacacaacctctgtagcaaagacaattcaaatcaaatgtgtgt---g |
707 |
Q |
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||| ||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
12754959 |
aaaagtgtgtttggtgtctaacatgcgttggtgaacaacaccaacacaatagtaacacaacctctgtagcacagacaattcaaatcaaatgtgtgtctgg |
12755058 |
T |
|
| Q |
708 |
tatcggacatgtgtcattcgacaacattaacacaatactaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaaatatctgacacat |
807 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12755059 |
tatcggacatgtgtcattcaacaacattaacacaatactaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaagtatctgacacat |
12755158 |
T |
|
| Q |
808 |
gtaagagtctattaatcagtgtctacatgtcagtgtcgtgttagtgcttcgtagcatact |
867 |
Q |
| |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12755159 |
gta--agtctattaatcagtgcctacatgtcagtgtcgtgttagtgcttcgtagcatact |
12755216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 518 - 842
Target Start/End: Original strand, 12817827 - 12818152
Alignment:
| Q |
518 |
taaaggtgtgtctggtgtctaacaagtatcggtagataacactaacacaacacagatacaattactaatacaaaatcacaggcaacccagatcaaatgtg |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12817827 |
taaaggtgtgtctggtgtctaacaagtatcggtagataacactaacacaacacagatacaattactaatacaaaatcacaggcaacccagatcaaaagtg |
12817926 |
T |
|
| Q |
618 |
tgtttggtgtttaacatgtgtcggtgatcaacaccaacacaatagtaacacaacctctgtagcaaagacaattcaaatcaaatgtgtgt---gtatcgga |
714 |
Q |
| |
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|||||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
12817927 |
tgtttggtgtctaacatgcgttggtgaacaacaccaacacaatagtaacacaacctctgtagcacagacaattcaaatcaaatgtgtgtctggtatcgga |
12818026 |
T |
|
| Q |
715 |
catgtgtcattcgacaacattaacacaatactaacacaaaacctatgtagcatacacaattcagatcaattgtatgtcaaatatctgacacatgtaagag |
814 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
12818027 |
catgtgtcattcaacaacattaacacaatactaacacaaaacttatgtagcatacacaattcagatcaattgtatgtcaagtatctgacacatgta--ag |
12818124 |
T |
|
| Q |
815 |
tctattaatcagtgtctacatgtcagtg |
842 |
Q |
| |
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|||||||||||||| ||||||||||||| |
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| T |
12818125 |
tctattaatcagtgcctacatgtcagtg |
12818152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 188 - 449
Target Start/End: Original strand, 12754536 - 12754797
Alignment:
| Q |
188 |
tcctcttactcacatctaaacccaaacaatagcacaaccgcgttgtataataacacaactttatgtttttacccatcaaactaaagctaaattgttcaaa |
287 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
12754536 |
tcctcttactcacatctaaaccaaaacaatagcacaaccgcgttgtataataacacaactttacgtttttacccatcaaactaaagccaaattgttcaaa |
12754635 |
T |
|
| Q |
288 |
aagaatgacaccattaaattctatcaagtgtaactcaccatcattaggagaatggcagctcaaaagaagaccctcaactaggggcacggtatgcgtgaag |
387 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12754636 |
aagaatgacaccattaaattcaatcaagtgtaactcaccatcattaggagaatggcagctcaaaagaagaccctcaactaggggcacggtatgcgtgaag |
12754735 |
T |
|
| Q |
388 |
cattgcataattgaattgagaaagcatgtgttaccaaggttagcaagcccagctccctgttg |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12754736 |
cattgcataattgaattgagaaagcatgtgttaccaaggttggcaagcccagctccctgttg |
12754797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 188 - 449
Target Start/End: Original strand, 12817498 - 12817759
Alignment:
| Q |
188 |
tcctcttactcacatctaaacccaaacaatagcacaaccgcgttgtataataacacaactttatgtttttacccatcaaactaaagctaaattgttcaaa |
287 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
12817498 |
tcctcttactcacatctaaaccaaaacaatagcacaaccgcgttgtataataacacaactttacgtttttacccatcaaactaaagccaaattgttcaaa |
12817597 |
T |
|
| Q |
288 |
aagaatgacaccattaaattctatcaagtgtaactcaccatcattaggagaatggcagctcaaaagaagaccctcaactaggggcacggtatgcgtgaag |
387 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12817598 |
aagaatgacaccattaaattcaatcaagtgtaactcaccatcattaggagaatggcagctcaaaagaagaccctcaactaggggcacggtatgcgtgaag |
12817697 |
T |
|
| Q |
388 |
cattgcataattgaattgagaaagcatgtgttaccaaggttagcaagcccagctccctgttg |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12817698 |
cattgcataattgaattgagaaagcatgtgttaccaaggttggcaagcccagctccctgttg |
12817759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 923 - 971
Target Start/End: Original strand, 12755280 - 12755328
Alignment:
| Q |
923 |
cgcttacaatcatcaatggcacaactttagaatcagaatcataaacttc |
971 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12755280 |
cgcttacaatcatcaatggcacagctttagaatcagaatcataaacttc |
12755328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 923 - 971
Target Start/End: Original strand, 12818228 - 12818276
Alignment:
| Q |
923 |
cgcttacaatcatcaatggcacaactttagaatcagaatcataaacttc |
971 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12818228 |
cgcttacaatcatcaatggcacagctttagaatcagaatcataaacttc |
12818276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 12754370 - 12754401
Alignment:
| Q |
9 |
agcacagataacacagaacccattatgacctg |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
12754370 |
agcacagataacacagaacccattatgacctg |
12754401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 12817332 - 12817363
Alignment:
| Q |
9 |
agcacagataacacagaacccattatgacctg |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
12817332 |
agcacagataacacagaacccattatgacctg |
12817363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 324 - 440
Target Start/End: Complemental strand, 7773161 - 7773045
Alignment:
| Q |
324 |
accatcattaggagaatggcagctcaaaagaagaccctcaactaggggcacggtatgcgtgaagcattgcataattgaattgagaaagcatgtgttacca |
423 |
Q |
| |
|
|||||||||| || ||||| || | ||| |||||| || ||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7773161 |
accatcattacaagcatggctgcacgaaaaaagaccttcgactagaggcactgtatgattgaagcattgcatgattgaattgagaaagcatgtgttacca |
7773062 |
T |
|
| Q |
424 |
aggttagcaagcccagc |
440 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
7773061 |
aggttagcaagtccagc |
7773045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 324 - 440
Target Start/End: Complemental strand, 7767026 - 7766910
Alignment:
| Q |
324 |
accatcattaggagaatggcagctcaaaagaagaccctcaactaggggcacggtatgcgtgaagcattgcataattgaattgagaaagcatgtgttacca |
423 |
Q |
| |
|
||||||||||| || ||||| || | || |||||| || ||||| ||||| ||||| ||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
7767026 |
accatcattagaagcatggctgcacgtaaaaagaccttcgactagaggcaccgtatgaatgaagcattgcatgatcgaattgagaaagcatgtgttacca |
7766927 |
T |
|
| Q |
424 |
aggttagcaagcccagc |
440 |
Q |
| |
|
||||| ||||| ||||| |
|
|
| T |
7766926 |
aggttggcaagtccagc |
7766910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 324 - 428
Target Start/End: Complemental strand, 7777996 - 7777892
Alignment:
| Q |
324 |
accatcattaggagaatggcagctcaaaagaagaccctcaactaggggcacggtatgcgtgaagcattgcataattgaattgagaaagcatgtgttacca |
423 |
Q |
| |
|
|||||||||| || ||||| || | ||| |||||| || ||||| ||||| ||||| |||||||||||||| || |||||||||||||||||||||||| |
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| T |
7777996 |
accatcattacaagcatggctgcacgaaaaaagaccttcgactagaggcactgtatgagtgaagcattgcatgatcgaattgagaaagcatgtgttacca |
7777897 |
T |
|
| Q |
424 |
aggtt |
428 |
Q |
| |
|
||||| |
|
|
| T |
7777896 |
aggtt |
7777892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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