View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12048_low_10 (Length: 343)

Name: NF12048_low_10
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12048_low_10
NF12048_low_10
[»] chr2 (6 HSPs)
chr2 (13-325)||(40056216-40056527)
chr2 (139-228)||(38356837-38356926)
chr2 (139-223)||(35063612-35063696)
chr2 (112-240)||(1299954-1300080)
chr2 (139-223)||(29453643-29453727)
chr2 (119-201)||(45513049-45513131)
[»] chr4 (7 HSPs)
chr4 (34-172)||(39484928-39485067)
chr4 (112-223)||(32641905-32642015)
chr4 (83-228)||(12007454-12007599)
chr4 (134-189)||(50072020-50072075)
chr4 (142-228)||(12007919-12008005)
chr4 (127-228)||(32641168-32641269)
chr4 (160-228)||(2486972-2487040)
[»] scaffold0119 (1 HSPs)
scaffold0119 (89-240)||(36-185)
[»] chr6 (2 HSPs)
chr6 (89-240)||(26670609-26670758)
chr6 (139-200)||(12029351-12029412)
[»] chr8 (5 HSPs)
chr8 (125-228)||(41456052-41456155)
chr8 (134-203)||(13231843-13231912)
chr8 (123-203)||(2623232-2623312)
chr8 (139-223)||(7043101-7043185)
chr8 (139-189)||(35595-35645)
[»] chr1 (6 HSPs)
chr1 (142-223)||(28651687-28651768)
chr1 (111-228)||(27818728-27818844)
chr1 (139-223)||(25476083-25476167)
chr1 (114-188)||(48621163-48621237)
chr1 (112-223)||(44634034-44634145)
chr1 (112-189)||(48621841-48621918)
[»] chr5 (5 HSPs)
chr5 (139-220)||(24153970-24154051)
chr5 (134-230)||(17115698-17115794)
chr5 (112-223)||(31079720-31079831)
chr5 (112-228)||(24153192-24153308)
chr5 (147-203)||(29108111-29108166)
[»] chr3 (8 HSPs)
chr3 (139-228)||(45004705-45004794)
chr3 (112-204)||(45146663-45146755)
chr3 (143-223)||(51489853-51489933)
chr3 (134-189)||(50766027-50766082)
chr3 (134-223)||(50823970-50824059)
chr3 (134-223)||(50851801-50851890)
chr3 (144-200)||(35744535-35744591)
chr3 (123-215)||(45005505-45005597)
[»] chr7 (2 HSPs)
chr7 (142-223)||(24555973-24556054)
chr7 (139-200)||(35263740-35263801)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 40056527 - 40056216
Alignment:
Q  13 gagaggaagcaaactatacaacaataatgaagaaccac-gttaaatattagtggaaaattctctaaagaaattaacagaaagttaactgtcttagaaaac 111  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40056527 gagaggaagcaaacta--caacaataatgaagaaccaccgttaaatattagtggaaaattctctaaagaaattaacagaaagttaactgtcttagcaaac 40056430  T
Q  112 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40056429 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacctcagcggag 40056330  T
Q  212 gtgagtgtaattctcccattatctaatagttcaatggcacttacgtgccgttcttcacaccttctctagcgattgagatttgcaccaacgtggtggaacc 311  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40056329 gtgagtgtaattttcccattatctaatagttcaatggcacttacgtgccgttcttcacaccttctctagcgattgagatttgcaccaacgtggtggaacc 40056230  T
Q  312 aagtgagtaattgt 325  Q
    ||||||||||||||    
T  40056229 aagtgagtaattgt 40056216  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 38356926 - 38356837
Alignment:
Q  139 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctccc 228  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||| ||||| | || ||| ||||||| |||||||||||||||| ||||    
T  38356926 aacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtgtaattttccc 38356837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 35063696 - 35063612
Alignment:
Q  139 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 223  Q
    ||||||||||||||| ||||||||||| |||||||| || |||| |||| | |||| ||||||||||  ||||||||||||||||    
T  35063696 aacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgacattttaataaacctcaagggaggtgagtgtaatt 35063612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 1300080 - 1299954
Alignment:
Q  112 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 211  Q
    |||||| ||| |||||||||  || ||||| | || |||||||  || |||||||||||||||||||||||  ||||| |||| |||||| |||  ||||    
T  1300080 aagggaggtgtttgtctatttcattagaacattagagaggttagcgttagttttgaaactagaaggggtgt--gtgtcattttaataaacttcaaaggag 1299983  T
Q  212 gtgagtgtaattctcccattatctaatag 240  Q
    |||||||||||| || ||||| |||||||    
T  1299982 gtgagtgtaattttctcattagctaatag 1299954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 29453643 - 29453727
Alignment:
Q  139 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 223  Q
    ||||||| ||||||||||||||||||  |||||||| | |||||||||||  |||||||||||||| | ||| |||| |||||||    
T  29453643 aacttaaaggaggttaatgtaagtttcaaaactagaggaggtgttagtgttattttcataaacctcgggggatgtgaatgtaatt 29453727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 45513049 - 45513131
Alignment:
Q  119 gtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaac 201  Q
    |||||||||||||  || | |||||| ||||||||||||| ||||| ||||||||| |||||||   ||||||||| ||||||    
T  45513049 gtgattgtctatttgattaaaacttacgggaggttaatgttagtttcgaaactagagggggtgtcgatgtcgttttaataaac 45513131  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 172
Target Start/End: Original strand, 39484928 - 39485067
Alignment:
Q  34 caataatgaagaaccac-gttaaatattagtggaaaattctctaaagaaattaacagaaagttaactgtcttagaaaacaagggatgtgattgtctatta 132  Q
    ||||| ||||||||| | ||||||||||| ||||||| |||||||||||| |||||| || ||||| || |||  ||| |||||||||| || | |||||    
T  39484928 caatattgaagaacctccgttaaatattaatggaaaaatctctaaagaaagtaacagtaatttaacagtgttaacaaagaagggatgtgcttatttatta 39485027  T
Q  133 tatgagaacttaagggaggttaatgtaagttttgaaacta 172  Q
     ||||||||||||| ||||||| |||||||||||||||||    
T  39485028 catgagaacttaagcgaggttagtgtaagttttgaaacta 39485067  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 32641905 - 32642015
Alignment:
Q  112 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 211  Q
    ||||| |||| | ||||||| |||||||| ||||||||||||||| |||||||| ||| || |||||| ||||||||| ||| |||| || || | ||||    
T  32641905 aaggggtgtgttagtctattttatgagaatttaagggaggttaatataagttttaaaatta-aaggggggttagtgtcatttacatagacttcgggggag 32642003  T
Q  212 gtgagtgtaatt 223  Q
    ||||||||||||    
T  32642004 gtgagtgtaatt 32642015  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 12007599 - 12007454
Alignment:
Q  83 ttaacagaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgt 182  Q
    |||||||||||||||  || |||   || |||||| ||| |||| ||||  ||||||||||||| |||||||||||| ||||| |||||||| |||||||    
T  12007599 ttaacagaaagttaatggtgttaatgaaaaagggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgt 12007500  T
Q  183 tagtgtcgttttcataaacctcagcggaggtgagtgtaattctccc 228  Q
     |||||| ||||  ||||||  || ||||||  |||||||| ||||    
T  12007499 cagtgtcattttagtaaaccataggggaggttggtgtaattttccc 12007454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 50072020 - 50072075
Alignment:
Q  134 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 189  Q
    ||||||||||||||||||||  |||||||||| |||||| | ||||||||||||||    
T  50072020 atgagaacttaagggaggtttgtgtaagttttaaaactaaagggggtgttagtgtc 50072075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 12007919 - 12008005
Alignment:
Q  142 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctccc 228  Q
    ||||||||||||| |||||||||| ||| |||| ||||||| |||||| ||||  |||| || || ||||||| |||||||| ||||    
T  12007919 ttaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaatcttaggggaggtgtgtgtaattttccc 12008005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 32641269 - 32641168
Alignment:
Q  127 ctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctc 226  Q
    ||||| ||||||||||||||||| |||| ||||| |||| ||| |||| | ||||| |||||| ||| |||| || ||||  |||||| |||||||| ||    
T  32641269 ctattttatgagaacttaagggatgttagtgtaatttttaaaattagaggaggtgtcagtgtcatttacatagacttcaggagaggtgggtgtaattatc 32641170  T
Q  227 cc 228  Q
    ||    
T  32641169 cc 32641168  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 2486972 - 2487040
Alignment:
Q  160 agttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctccc 228  Q
    |||||| |||||||||||||||| ||||||||||| ||| |||| || |||||| | ||||||| ||||    
T  2486972 agttttaaaactagaaggggtgtcagtgtcgttttaatagaccttagtggaggtcattgtaattttccc 2487040  T

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Target: scaffold0119 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 240
Target Start/End: Original strand, 36 - 185
Alignment:
Q  89 gaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 188  Q
    |||||||||| || |||  ||| |||||| ||| |||||||||  || ||||| | ||||||||||  || |||||||||||||||||||||||  ||||    
T  36 gaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggggtgt--gtgt 133  T
Q  189 cgttttcataaacctcagcggaggtgagtgtaattctcccattatctaatag 240  Q
    | |||| ||||||||||  |||||||||||||||| || ||||| |||||||    
T  134 cattttaataaacctcaagggaggtgagtgtaattttctcattagctaatag 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 26670758 - 26670609
Alignment:
Q  89 gaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 188  Q
    |||||||||| || |||  ||| |||||| ||| |||||||||  || ||||| | ||||||||||  || |||||||||||||||||||||||  ||||    
T  26670758 gaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggggtgt--gtgt 26670661  T
Q  189 cgttttcataaacctcagcggaggtgagtgtaattctcccattatctaatag 240  Q
    | |||| ||||||||||  |||||||||||||||| || ||||| |||||||    
T  26670660 cattttaataaacctcaagggaggtgagtgtaattttctcattagctaatag 26670609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 12029412 - 12029351
Alignment:
Q  139 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 200  Q
    ||||||||||| ||||||||   |||||||||||||  ||||||||||||| |||| |||||    
T  12029412 aacttaagggatgttaatgttcattttgaaactagagagggtgttagtgtcattttaataaa 12029351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 228
Target Start/End: Original strand, 41456052 - 41456155
Alignment:
Q  125 gtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattc 224  Q
    ||||||| || ||||||||||||||||||| |||||||||  ||| |||| | | ||| |||||| |||||||| ||||||| ||||||||||||||||     
T  41456052 gtctattttacgagaacttaagggaggttagtgtaagtttaaaaattagaggagatgtcagtgtcattttcatagacctcaggggaggtgagtgtaatta 41456151  T
Q  225 tccc 228  Q
    ||||    
T  41456152 tccc 41456155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 13231843 - 13231912
Alignment:
Q  134 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacct 203  Q
    ||||||||| ||||||||||| |||||||||| ||| |||| ||||||| |||||| ||||  |||||||    
T  13231843 atgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaacct 13231912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 2623232 - 2623312
Alignment:
Q  123 ttgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacct 203  Q
    |||||||||  |||| |||| ||||||||||| |||||||||| ||| |||| ||| ||| |||||| |||| ||||||||    
T  2623232 ttgtctatttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaacct 2623312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 7043185 - 7043101
Alignment:
Q  139 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 223  Q
    |||||||||||||||||| |   |||| |||||||| | |||||||||| | |||| |||||||| || ||||||||||| ||||    
T  7043185 aacttaagggaggttaatattcattttaaaactagaggtggtgttagtgccattttaataaaccttaggggaggtgagtgcaatt 7043101  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 35645 - 35595
Alignment:
Q  139 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 189  Q
    ||||||||| ||||||||||||||||| |||||| || ||||||| |||||    
T  35645 aacttaaggaaggttaatgtaagttttaaaactaaaaagggtgtttgtgtc 35595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 28651768 - 28651687
Alignment:
Q  142 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 223  Q
    |||||||||||||||||||||||| ||| |||| ||||||| |||||| |||| ||| ||||||| |||||||| |||||||    
T  28651768 ttaagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcattttaatagacctcaggggaggtgattgtaatt 28651687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 27818844 - 27818728
Alignment:
Q  111 caagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcgga 210  Q
    ||||||| |||  ||||||||| | || || |||||||| || |||||| ||||| ||||||||  ||||||||||||| |||||||||| | ||| |||    
T  27818844 caagggaggtgtctgtctattaaaggaaaatttaagggatgtaaatgtatgttttaaaactagagagggtgttagtgtcattttcataaatc-cagggga 27818746  T
Q  211 ggtgagtgtaattctccc 228  Q
    ||||||||||||| ||||    
T  27818745 ggtgagtgtaattttccc 27818728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 25476083 - 25476167
Alignment:
Q  139 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 223  Q
    ||||| |||||||||  |||||||||| |||||||| || |||| |||||| |||| ||||||||||| |||||||| |||||||    
T  25476083 aacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtcattttaataaacctcaggggaggtgaatgtaatt 25476167  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 48621237 - 48621163
Alignment:
Q  114 gggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 188  Q
    |||||||| |||||||||| |||| |||||||||||| |||||||||  ||| |||||||| ||||||| |||||    
T  48621237 gggatgtgtttgtctattacatgataacttaagggagattaatgtaaaatttaaaactagagggggtgtcagtgt 48621163  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 44634034 - 44634145
Alignment:
Q  112 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 211  Q
    |||||| |||||||| ||||  ||||||||||||||||||||  | |  ||||| |||||||| ||||||| | |||| ||||  ||||| | || ||||    
T  44634034 aagggaggtgattgtatatttgatgagaacttaagggaggttggtatttgttttaaaactagagggggtgtcaatgtcattttagtaaactttaggggag 44634133  T
Q  212 gtgagtgtaatt 223  Q
    ||||||| ||||    
T  44634134 gtgagtgcaatt 44634145  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 189
Target Start/End: Original strand, 48621841 - 48621918
Alignment:
Q  112 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 189  Q
    |||||| |||||||| ||||| |  | |||||||||||||||| |||| ||||| |||||| | |||||||| |||||    
T  48621841 aagggaggtgattgtgtattacaaaaaaacttaagggaggttagtgtatgtttttaaactaaagggggtgttggtgtc 48621918  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 24153970 - 24154051
Alignment:
Q  139 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgta 220  Q
    |||||||||||||||||||| |||||| |||||||| ||||| | | |||| |||| |||||||| || |||||||||||||    
T  24153970 aacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaaccttaggggaggtgagtgta 24154051  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 17115794 - 17115698
Alignment:
Q  134 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctcccat 230  Q
    ||||||||||||||||||||  |||||||||| ||||||||   |||||||||||| |||  |   | ||||| ||||||||| |||||| ||||||    
T  17115794 atgagaacttaagggaggttggtgtaagttttaaaactagagttggtgttagtgtcatttcaacgtaactcagaggaggtgagagtaattttcccat 17115698  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 31079720 - 31079831
Alignment:
Q  112 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 211  Q
    |||||||||| |||||||||   ||| ||| ||||||||||||||||   |||| ||||||||   |||||||||| | |||| |||||||| || ||||    
T  31079720 aagggatgtgtttgtctatttgctgaaaacctaagggaggttaatgttcattttaaaactagagaaggtgttagtgccattttaataaaccttaggggag 31079819  T
Q  212 gtgagtgtaatt 223  Q
    || |||| ||||    
T  31079820 gtaagtgcaatt 31079831  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 24153308 - 24153192
Alignment:
Q  112 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 211  Q
    |||||| ||| ||||| |||  || |||||||||||||||||| ||| | |||| ||||||||  ||||||  || || |||| ||| ||||||  | ||    
T  24153308 aagggaggtgtttgtccatttcattagaacttaagggaggttagtgttacttttaaaactagagtgggtgtctgtctcattttaatagacctcaaggaag 24153209  T
Q  212 gtgagtgtaattctccc 228  Q
    |||||||||||| ||||    
T  24153208 gtgagtgtaattttccc 24153192  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 29108166 - 29108111
Alignment:
Q  147 ggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacct 203  Q
    |||||||| |||||||||| |||||||| |||||||||||||| ||||  |||||||    
T  29108166 ggaggttagtgtaagttttaaaactaga-ggggtgttagtgtcatttttgtaaacct 29108111  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 228
Target Start/End: Complemental strand, 45004794 - 45004705
Alignment:
Q  139 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaattctccc 228  Q
    ||||||||||||||| ||||||| ||| |||||| | ||||||| | || | |||| ||||||||||| |||||||||||||||| ||||    
T  45004794 aacttaagggaggttcatgtaagatttaaaactaaagggggtgtcattgacattttaataaacctcagaggaggtgagtgtaattttccc 45004705  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 45146663 - 45146755
Alignment:
Q  112 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctc 204  Q
    |||||| ||| |||||||||  || ||||| |||||||||||| ||| |||||| ||| |||||||| |||| ||||| |||| |||||||||    
T  45146663 aagggaggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacctc 45146755  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 51489853 - 51489933
Alignment:
Q  143 taagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 223  Q
    |||||||||||||| |   |||| |||||||| |||||||||||| | |||| |||||||| || ||||||||||| ||||    
T  51489853 taagggaggttaatattcattttaaaactagagggggtgttagtgccattttaataaaccttaggggaggtgagtgcaatt 51489933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 50766082 - 50766027
Alignment:
Q  134 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 189  Q
    |||| |||||||||||| ||| |||| ||||| |||||||| ||||||||||||||    
T  50766082 atgaaaacttaagggagattagtgtaggttttcaaactagagggggtgttagtgtc 50766027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 50824059 - 50823970
Alignment:
Q  134 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 223  Q
    |||| ||||||| |||||||| |||| ||||| ||||||||  ||||||||||||| |||  ||||| ||||  |||||||  |||||||    
T  50824059 atgaaaacttaaaggaggttagtgtaggttttcaaactagagagggtgttagtgtcatttagataaaactcaagggaggtggatgtaatt 50823970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 50851801 - 50851890
Alignment:
Q  134 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 223  Q
    |||| ||||||| |||||||| |||| ||||| ||||||||  ||||||||||||| |||  ||||| ||||  |||||||  |||||||    
T  50851801 atgaaaacttaaaggaggttagtgtaggttttcaaactagagagggtgttagtgtcatttagataaaactcaagggaggtggatgtaatt 50851890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 35744535 - 35744591
Alignment:
Q  144 aagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 200  Q
    ||||||||||||||| |||||||||| |||| ||| ||| | ||||||||| |||||    
T  35744535 aagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaa 35744591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 45005505 - 45005597
Alignment:
Q  123 ttgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtga 215  Q
    |||||||||  ||||||||||||||||| | | ||| |||||| |||||||  |   |||||||||| |||| ||||||||||  ||||||||    
T  45005505 ttgtctatttgatgagaacttaagggagatcagtgtgagttttaaaactagtggaaatgttagtgtcattttaataaacctcaagggaggtga 45005597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 24555973 - 24556054
Alignment:
Q  142 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgagtgtaatt 223  Q
    |||||||||||||||||   || | |||||||| |||||||| |||||||||  | ||||||||| |||||| |||||||||    
T  24555973 ttaagggaggttaatgtctattattaaactagagggggtgtttgtgtcgtttgaacaaacctcaggggaggttagtgtaatt 24556054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 35263801 - 35263740
Alignment:
Q  139 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 200  Q
    ||||||||||||||||||||||||||  ||| ||||| || ||||| |||| ||||||||||    
T  35263801 aacttaagggaggttaatgtaagtttcaaaattagaaaggatgttaatgtcattttcataaa 35263740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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