View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12048_low_17 (Length: 232)
Name: NF12048_low_17
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12048_low_17 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 6942397 - 6942595
Alignment:
| Q |
18 |
gagattcctagaggcataccatctgaaaagcttccttgaccaattgggtagatcaagaaaacagcagtagcagctgcaacaggagctgaatatgcaacag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6942397 |
gagattcctagaggcataccatctgaaaagcttccttgaccaattgggtagatcaagaaaactgcagtagcagctgcaacaggagctgaatatgcaacag |
6942496 |
T |
|
| Q |
118 |
caatccaagggcgcatacccagacgaaaactaagttcccactcacgacccatgtaacaagctacaccaagtaagaagtgtagaacaattagttcataag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6942497 |
caatccaagggcgcatacccagacgaaaactaagttcccactcacgacccatgtaacaagctacaccaagtaagaagtgtagaacaattagttcataag |
6942595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 5597151 - 5597346
Alignment:
| Q |
19 |
agattcctagaggcataccatctgaaaagcttccttgaccaattgggtagatcaagaaaacagcagtagcagctgcaacaggagctgaatatgcaacagc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| | | |
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| T |
5597151 |
agattcctagaggcataccatctgaaaagcttccttgaccaattgggtagatcaagaaaactgcactagcagctgcaacaggaactgaatatgcaataac |
5597250 |
T |
|
| Q |
119 |
aatccaagggcgcatacccagacgaaaactaagttcccactcacgacccatgtaacaagctacaccaagtaagaagtgtagaacaattagttcataag |
216 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5597251 |
aatccaagggcgcatacccagacgaaaac--agttcccactcacgaccgatggaacaagctacaccaagtaagaagtgtataacaattagttcataag |
5597346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 6941261 - 6941300
Alignment:
| Q |
63 |
gggtagatcaagaaaacagcagtagcagctgcaacaggag |
102 |
Q |
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| T |
6941261 |
gggtagatcaagaaaacagcagtatcagctgcaacaggag |
6941300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 18304689 - 18304491
Alignment:
| Q |
18 |
gagattcctagaggcataccatctgaaaagcttccttgaccaattgggtagatcaagaaaacagcagtagcagctgcaacaggagctgaatatgcaacag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18304689 |
gagattcctagaggcataccatctgaaaagcttccttgaccaattgggtagatcaagaaaactgcagtagcagctgcaacaggagctgaatatgcaacag |
18304590 |
T |
|
| Q |
118 |
caatccaagggcgcatacccagacgaaaactaagttcccactcacgacccatgtaacaagctacaccaagtaagaagtgtagaacaattagttcataag |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18304589 |
caatccaagggcgcatacccagacgaaaactaagttcccactcacgacccatgtaacaagctacaccaagtaagaagtgtagaacaattagttcataag |
18304491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 525389 - 525506
Alignment:
| Q |
16 |
cagagattcctagaggcataccatctgaaaagcttccttgaccaattgggtagatcaagaaaacagcagtagcagctgcaacaggagctgaatatgcaac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| |
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| T |
525389 |
cagagattcctagaggcataccatctgaaaagcttcc------aattgggtagatcaaggaaactgcagtaacagctgcaacaggagctgaatatgcaac |
525482 |
T |
|
| Q |
116 |
agcaatccaagggcgcatacccag |
139 |
Q |
| |
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| ||||||||| |||||||||||| |
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| T |
525483 |
aacaatccaagagcgcatacccag |
525506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 18305821 - 18305782
Alignment:
| Q |
63 |
gggtagatcaagaaaacagcagtagcagctgcaacaggag |
102 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
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| T |
18305821 |
gggtagatcaagaaaacagcagtatcagctgcaacaggag |
18305782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 4468046 - 4468011
Alignment:
| Q |
63 |
gggtagatcaagaaaacagcagtagcagctgcaaca |
98 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
4468046 |
gggtagatcaagaaaacagcagtatcagctgcaaca |
4468011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 38650886 - 38651086
Alignment:
| Q |
16 |
cagagattcctagaggcataccatctgaaaagcttccttgaccaattgggtagatcaagaaaacagcagtagcagctgcaacaggagctgaatatgcaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38650886 |
cagagattcctagaggcataccatctgaaaagcttccttgaccaattgggtagatcaagaaaactgcagtagcagctgcaacaggagctgaatatgcaac |
38650985 |
T |
|
| Q |
116 |
agcaatccaagggcgcatacccagacgaaaactaagttcccactcacgacccatgtaacaagctacaccaagtaagaagtgtagaacaattagttcataa |
215 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38650986 |
aacaatccaagggcgcatacccagacgaaaactaagttcccactcacgacccatgtaacaagctacaccaagtaagaagtgtagaacaattagttcataa |
38651085 |
T |
|
| Q |
216 |
g |
216 |
Q |
| |
|
| |
|
|
| T |
38651086 |
g |
38651086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 25174867 - 25174911
Alignment:
| Q |
171 |
taacaagctacaccaagtaagaagtgtagaacaattagttcataa |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25174867 |
taacaagctacaccaagtaagaagtgtagaacaattagttcataa |
25174911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 200863 - 201063
Alignment:
| Q |
16 |
cagagattcctagaggcataccatctgaaaagcttccttgaccaattgggtagatcaagaaaacagcagtagcagctgcaacaggagctgaatatgcaac |
115 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
200863 |
cagagattcctaaaggcataccatcagaaaagcttccttgaccaatagggtaaatcaagaaaacagcagtagcagctgcaacaggagctgaatatgcaac |
200962 |
T |
|
| Q |
116 |
agcaatccaagggcgcatacccagacgaaaactaagttcccactcacgacccatgtaacaagctacaccaagtaagaagtgtagaacaattagttcataa |
215 |
Q |
| |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
200963 |
agcaatccaaggacgcatacccagacggaaactaagttcccactcacgacccatataacaagctacaccaagtaagaagtgtagaacaattagctcataa |
201062 |
T |
|
| Q |
216 |
g |
216 |
Q |
| |
|
| |
|
|
| T |
201063 |
g |
201063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 5721211 - 5721172
Alignment:
| Q |
63 |
gggtagatcaagaaaacagcagtagcagctgcaacaggag |
102 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
5721211 |
gggtagatcaagaaaacagcagtatcagctgcaacaggag |
5721172 |
T |
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