View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12048_low_18 (Length: 204)
Name: NF12048_low_18
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12048_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 43526702 - 43526521
Alignment:
| Q |
1 |
gaaaaacactgacctacctggtctttgattttcctgtagtccattttagttagtatcgcaagaaaagagaagatcgatctacagacaagcacttgaattc |
100 |
Q |
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| T |
43526702 |
gaaaaacactgacctacctggtctttgattttcctgtagtccattttagttagtatcgcaagaaaagagaagatcgatctacagacagacacttgaattc |
43526603 |
T |
|
| Q |
101 |
gttcaaaccctacacaacacaccacgcattctaattctttttccaattcaattcaattccaacactcagatagatagataga |
182 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43526602 |
gttcaaaccctacacaacacaccacgcattctaattctttttccaattcaattcaattacaacactcagatagatagataga |
43526521 |
T |
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