View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12048_low_19 (Length: 202)
Name: NF12048_low_19
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12048_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 46478765 - 46478942
Alignment:
| Q |
15 |
caaaggggagtaataattcaagcagaaatttgtg--gaaacacatctgtaactgattcgtagcatataa------gaataagaatataagaaaacgaacc |
106 |
Q |
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| T |
46478765 |
caaaggggagtaataattcaagcagaaatttgtgcagaaacacatctgtaactgattcgtagcatataagaataagaataagaatataagaaaacgaacc |
46478864 |
T |
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| Q |
107 |
tggaatctgcagatatagtaatcatctccaaacaaagctcgcatgccatcaactggtttcactttggggtttctgggt |
184 |
Q |
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| T |
46478865 |
tggaatctgcagatatagtaatcatctccaaacaaagctcgcatgccatcaactggtttcattttggggtttctgggt |
46478942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 46494342 - 46494442
Alignment:
| Q |
84 |
ataagaatataagaaaacgaacctggaatctgcagatatagtaatcatctccaaacaaagctcgcatgccatcaactggtttcactttggggtttctggg |
183 |
Q |
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| T |
46494342 |
ataaaaatatatgaattcgaacctggaatctgcagatataatagtcatctccaaataaagctcgcatgccatcaactggtttcactttggggtttctggg |
46494441 |
T |
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| Q |
184 |
t |
184 |
Q |
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| T |
46494442 |
t |
46494442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 46516644 - 46516727
Alignment:
| Q |
97 |
aaaacgaacctggaatctgcagatatagtaatcatctccaaacaaagctcgcatgccatcaactggtttcactttggggtttct |
180 |
Q |
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| T |
46516644 |
aaaacaaacctggaatctgcagatataataatcgtcaccaaacaaagcttgcatgccatcaacaggttttactttggggtttct |
46516727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 46490063 - 46490144
Alignment:
| Q |
103 |
aacctggaatctgcagatatagtaatcatctccaaacaaagctcgcatgccatcaactggtttcactttggggtttctgggt |
184 |
Q |
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| T |
46490063 |
aacctggaatctgcagatataataatcatcaccatacacagctcgcatgccatcaacaggtttcaattttgggtttctgggt |
46490144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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