View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12048_low_4 (Length: 569)
Name: NF12048_low_4
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12048_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 44576070 - 44575521
Alignment:
| Q |
1 |
acaattagagagcttctttaattggtggtatttcactttcaccattgcacttgttatagtgctcactggtgttgtctatattcaaactaatgtaagctgg |
100 |
Q |
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| T |
44576070 |
acaattagagagcttctttaattggtggtatttcactttcaccattgcacttgttatagtgctcactggtgttgtctatattcaaactaatgtaagctgg |
44575971 |
T |
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| Q |
101 |
actttaggatttgcaattccgacggtttgtcttgctttctcgataatcatctttctatttggtcgcggcacttacatttacaaaaaacctcaagggagcg |
200 |
Q |
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| T |
44575970 |
actttaggatttgcaattccgacggtttgtcttgctttctcaataatcatctttctatttggtcgcggcacttacatttacaaaaaacctcaagggagcg |
44575871 |
T |
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| Q |
201 |
tttttacagacatggcaaaggtgatcgttgcagcatgtcgaaaacgcaaacttcagctttcaaatagaactttatatgatcatgtttctacattgtcaga |
300 |
Q |
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| T |
44575870 |
tttttacagacatggcaaaggtgatcgttgcagcatgtcgaaaacgcaaacttcagctttcaaatagaactttatatgatcatgtttctacattgtcaga |
44575771 |
T |
|
| Q |
301 |
atcagaaaacattaggcttgttcaaacagacaggttcaagtttcttgataaggcggctataatagctgaaccaagtgaattgaacaaccaaggaattgct |
400 |
Q |
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| T |
44575770 |
atcagaaaacattaggcttgttcaaacagacaggttcaagtttcttgataaggcggctataatagctgaaccaagtgaattgaacaaccaaggaattgct |
44575671 |
T |
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| Q |
401 |
aagaatggttggagactttgtagtttgcaacaagtggaacacttgaaatgcttgtttggaattctaccagtatgggtgacaggaatctgttgtttcattg |
500 |
Q |
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| T |
44575670 |
aagaatggttggagactttgtagtttgcaacaagtggaacacttgaaatgcttgtttggaattctaccagtatgggtgacaggaatttgttgtttcattg |
44575571 |
T |
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| Q |
501 |
taatggatcagcagagcacatttggtgtgcttcaagttatacaaactgat |
550 |
Q |
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| T |
44575570 |
taatggatcagcagagcacatttggtgtgcttcaagttatacagactgat |
44575521 |
T |
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