View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12048_low_8 (Length: 442)

Name: NF12048_low_8
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12048_low_8
NF12048_low_8
[»] chr3 (3 HSPs)
chr3 (19-426)||(18161437-18161847)
chr3 (59-188)||(19412205-19412329)
chr3 (232-287)||(19412122-19412177)
[»] chr8 (9 HSPs)
chr8 (332-415)||(19409112-19409194)
chr8 (332-415)||(19456131-19456213)
chr8 (332-415)||(19471153-19471235)
chr8 (332-415)||(19524864-19524946)
chr8 (332-415)||(19542077-19542159)
chr8 (332-415)||(19590538-19590620)
chr8 (369-426)||(19459509-19459565)
chr8 (369-426)||(19557187-19557243)
chr8 (332-396)||(19403193-19403256)
[»] chr1 (1 HSPs)
chr1 (336-426)||(33899170-33899260)
[»] chr6 (2 HSPs)
chr6 (336-414)||(7441159-7441237)
chr6 (376-424)||(6796550-6796598)


Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 18161847 - 18161437
Alignment:
Q  19 acattctaacttcactattcttcatgaaagttagatacattatttaaggatagttcgtaagtttccttttctcttttgattatgtgattaatgatgttta 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18161847 acattctaacttcactgttcttcatgaaagttagatacattatttaaggatagttcgtaaatttccttttctcttttgattatgtgattaatgatgttta 18161748  T
Q  119 attattgtaaaaggatgtgtggtggattagagtatttaaaatgttgttgtaacaactaacaaccata---gtccattcaaggtagctacccatcacaatc 215  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  18161747 attattgtcaaaggatgtgtggcggattagagtatttaaaatgttgttgtaacaactaacaaccataatagtccattcaaggtagctacccatcacaatc 18161648  T
Q  216 acaattcaatgagaatgagaatgaaaggtatttaaagtattaactatagtttgacatttggaccctttcctccttggtaaggaaaagtgtcggtttgctt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  18161647 acaattcaatgagaatgagaatgaaaggtatttaaagtattaactatagtttgacagttggaccctttcctcattggtaaggaaaagtgtcggtttgctt 18161548  T
Q  316 acaaccatactataataaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgtta 415  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18161547 acaaccatacgataataaattttctcttggcaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgtta 18161448  T
Q  416 gatcggattgt 426  Q
    |||||||||||    
T  18161447 gatcggattgt 18161437  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 19412329 - 19412205
Alignment:
Q  59 tatttaaggatagttcgtaagtttccttttctcttttgattatgtgattaatgatgtttaattattgtaaaaggatgtgtggtgg---attagagtattt 155  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||        | ||||||||||||||||   ||||||||||||    
T  19412329 tatttaaggattgttcgtaagtttctttttctcttttgattatgtgattaatgatgttt--------tcaaaggatgtgtggtggattattagagtattt 19412238  T
Q  156 aaaatgttgttgtaacaactaacaaccatagtc 188  Q
    ||||||||||||||||||| ||||||| |||||    
T  19412237 aaaatgttgttgtaacaaccaacaaccctagtc 19412205  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 19412177 - 19412122
Alignment:
Q  232 gagaatgaaaggtatttaaagtattaactatagtttgacatttggaccctttcctc 287  Q
    |||||||||| |||||||||||||| ||||| || | |||||||||||||||||||    
T  19412177 gagaatgaaaagtatttaaagtattcactatcgtctaacatttggaccctttcctc 19412122  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 19409112 - 19409194
Alignment:
Q  332 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgtta 415  Q
    ||||||||||||||| |||||||  || || |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  19409112 aaattttctcttgcctagtaatttttg-tagactcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgtta 19409194  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 19456131 - 19456213
Alignment:
Q  332 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgtta 415  Q
    ||||||||||||||| |||||||  || || |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  19456131 aaattttctcttgcctagtaatttttg-tagactcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgtta 19456213  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 19471235 - 19471153
Alignment:
Q  332 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgtta 415  Q
    ||||||||||||||| |||||||| || || | |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  19471235 aaattttctcttgcctagtaattcttg-tagattcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgtta 19471153  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 19524946 - 19524864
Alignment:
Q  332 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgtta 415  Q
    ||||||||||||||| |||||||  || || |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  19524946 aaattttctcttgcctagtaatttttg-tagactcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgtta 19524864  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 19542159 - 19542077
Alignment:
Q  332 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgtta 415  Q
    ||||||||||||||| |||||||| || || | |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  19542159 aaattttctcttgcctagtaattcttg-tagattcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgtta 19542077  T

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Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 19590538 - 19590620
Alignment:
Q  332 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgtta 415  Q
    ||||||||||||||| |||||||| || || | |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  19590538 aaattttctcttgcctagtaattcttg-tagattcccgacttgctcaaatttatctgaaagaggagtgttagtggatggtgtta 19590620  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 426
Target Start/End: Complemental strand, 19459565 - 19459509
Alignment:
Q  369 gacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgt 426  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||    
T  19459565 gacttgctcaa-tttatctataagaggagtgttagtggatggtgttagttcggattgt 19459509  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 426
Target Start/End: Complemental strand, 19557243 - 19557187
Alignment:
Q  369 gacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgt 426  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||    
T  19557243 gacttgctcaa-tttatctataagaggagtgttagtggatggtgttagttcggattgt 19557187  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 19403193 - 19403256
Alignment:
Q  332 aaattttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagagga 396  Q
    ||||||||||||||| |||||||| || || ||||||||||||||||||||| ||||||||||||    
T  19403193 aaattttctcttgcctagtaattcttg-tagactcccgacttgctcaaatttgtctagaagagga 19403256  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 426
Target Start/End: Complemental strand, 33899260 - 33899170
Alignment:
Q  336 tttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgttagatcggattgt 426  Q
    ||||||||| |||||||||| ||||| ||||| || | |||||||| |||||| |||||||||||||||| |||| ||||| | |||||||    
T  33899260 tttctcttggcaagtaattcttggtagactccggattcgctcaaatgtatctaaaagaggagtgttagtgaatggagttagtttggattgt 33899170  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 414
Target Start/End: Original strand, 7441159 - 7441237
Alignment:
Q  336 tttctcttgccaagtaattcctggtaaactcccgacttgctcaaatttatctagaagaggagtgttagtggatggtgtt 414  Q
    |||||||||  ||||||||  ||||| ||| || ||| |||||||||||||||||||| |||||||||||||| |||||    
T  7441159 tttctcttggtaagtaatttttggtagacttcccactcgctcaaatttatctagaagatgagtgttagtggatagtgtt 7441237  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 6796598 - 6796550
Alignment:
Q  376 tcaaatttatctagaagaggagtgttagtggatggtgttagatcggatt 424  Q
    ||||||||||||||||||||||| ||||||| ||||||| | |||||||    
T  6796598 tcaaatttatctagaagaggagttttagtgggtggtgtttgttcggatt 6796550  T

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