View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12048_low_9 (Length: 393)
Name: NF12048_low_9
Description: NF12048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12048_low_9 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 43089 - 43455
Alignment:
| Q |
10 |
gccttcttaaccctctctttggttctcaaacttattgccaactgattaatcaaagttatgaaagaagagactcactctagaagcaaagagcatgaacaac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43089 |
gccttcttaaccctctctttggttctcaaacttattgccaactgattaatcaaagttatgaaagaagagactcactctagaagcaaagagcatgaacaac |
43188 |
T |
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| Q |
110 |
aacataattagaacaaagacacgaacatgctatagcaaaatatagtagataaacaatgataaatgagtcatagcatcgtacaaatcttgtgattttgaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43189 |
aacataattagaacaaagacacgaacatgctatagcaaaatatagtagataaacaatgataaatgagtcatagcatcgtacaaatcttgtgattttgaat |
43288 |
T |
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| Q |
210 |
atggctcttccaagatgttgtagaacaacacaaaacgatcatgtaaagttcttgtctaaacttcacatttggatgcactaaaatgttaaatgaaatgagt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43289 |
atggctcttccaagatgttgtagaacaacacaaaacgatcatgtaaagttcttgtctaaacttcacatttgggtgcactaaaatgttaaatgaaatgagt |
43388 |
T |
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| Q |
310 |
gcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactattttt |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43389 |
gcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactattttt |
43455 |
T |
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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 2681858 - 2681917
Alignment:
| Q |
304 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaa |
363 |
Q |
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| T |
2681858 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaa |
2681917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 5481453 - 5481394
Alignment:
| Q |
304 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaa |
363 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5481453 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaa |
5481394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 26544537 - 26544584
Alignment:
| Q |
10 |
gccttcttaaccctctctttggttctcaaacttattgccaactgatta |
57 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
26544537 |
gccttcttaaccctctctttggttctcaaacttattccaaactgatta |
26544584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 45005284 - 45005343
Alignment:
| Q |
304 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaa |
363 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45005284 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaa |
45005343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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