View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_high_11 (Length: 458)
Name: NF12049_high_11
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Complemental strand, 10045061 - 10044634
Alignment:
| Q |
20 |
aacagaaacataccatgttagcaaaaccacaacaaaaaccatccacattcaatacataaatactccctccattccttttaacttgcgctttaagattgtg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10045061 |
aacagaaacataccatgttagcaaaaccacaacaaaaaccatccacattcaatacataaatactccctccattccttttaacttgcgctttaagattgtg |
10044962 |
T |
|
| Q |
120 |
tacatgtaccaataaaatcaatagatcttattacttttgatataattatttctcttttacctataagagtcttaactatttattatctcattactgtttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10044961 |
tacatgtaccaataaaatcaatagatcttattacttttgatataattatttctcttttacctatgagagtcttaactatttattatctcattactgtttg |
10044862 |
T |
|
| Q |
220 |
caataaatactaaagtgtaataatgataaaacagtagcgtatattgcattgcacttatctataccagnnnnnnnnnntctataaaagcaacaagtaaaaa |
319 |
Q |
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| T |
10044861 |
caataaatactaaagtgtaatgatgataaaacagtagcgtatattgcattgcacttatctataccagaaaaaaaaaatctataaaagcaacaagtaaaaa |
10044762 |
T |
|
| Q |
320 |
gaaacagatggagtaattaaaatcaagagaacttatctataccagttatgtaccgactagacatctgagctgcaacaacaattgcacggtcttgaattcg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10044761 |
gaaacagatggagtaattaaaatcaagagaacttatctataccagttatgtaccgactagacatctgagctgcaacaacaattgcacggtcttgaattcg |
10044662 |
T |
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| Q |
420 |
aacaccatgatgaccctcgtatttctct |
447 |
Q |
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| T |
10044661 |
aacaccatgatgaccctcgtatttctct |
10044634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 45466835 - 45466756
Alignment:
| Q |
358 |
ataccagttatgtaccgactagacatctgagctgcaacaacaattgcacggtcttgaattcgaacaccatgatgaccctc |
437 |
Q |
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| T |
45466835 |
ataccggttatgtaccgactagacaattgagctgcaactacaatcgcgcgatcttgaattcgaacaccatgatgaccctc |
45466756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 3763208 - 3763271
Alignment:
| Q |
148 |
tattacttttgatataattatttctcttttacctataagagtcttaactatttattatctcatt |
211 |
Q |
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||||||||||||| |||||||| |||||| |||||| | ||||||||||||||||| ||||| |
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| T |
3763208 |
tattacttttgatggaattatttgtcttttttctataatactcttaactatttattatatcatt |
3763271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 55344457 - 55344490
Alignment:
| Q |
152 |
acttttgatataattatttctcttttacctataa |
185 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
55344457 |
acttttgatacaattatttctcttttacctataa |
55344490 |
T |
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