View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_high_17 (Length: 373)
Name: NF12049_high_17
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 91 - 239
Target Start/End: Complemental strand, 15084905 - 15084757
Alignment:
| Q |
91 |
gatagttgttttgatcataaattttattctttaatagtccgaacatctccaatggaaaattgaaaacatatggttaatcaataaaatatataatagaaca |
190 |
Q |
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| T |
15084905 |
gatagttattttcatcatgaattttattctttaatagtccgaacatctcccatgaaaaattgaaaacatatggttaatcaacaaaatatataataaaaca |
15084806 |
T |
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| Q |
191 |
actaaaaatgacttagtacatttaacaaatagttaaaacattaacacct |
239 |
Q |
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| T |
15084805 |
actaaaaatgacttagtacattgaacaaatagttaaaacattaacacct |
15084757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 15084753 - 15084703
Alignment:
| Q |
263 |
gttaaaaataaactaaccaagattcttgtttaagaattcaagtatagtaat |
313 |
Q |
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| T |
15084753 |
gttaaaaataaactaacaaagattcttgtttaagaattcgagtatagtaat |
15084703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 15084948 - 15084900
Alignment:
| Q |
18 |
attatattggcactaattaaatgggaaaaggttaaataatttaaaatagt |
67 |
Q |
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| T |
15084948 |
attatattgacactaattaaatggg-aaacgttaaataatttaagatagt |
15084900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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