View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_high_18 (Length: 341)
Name: NF12049_high_18
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 34264391 - 34264721
Alignment:
| Q |
1 |
tctcatttattttgacactaatttagccaaacatcgcagtatacggctcttcattttaggaaactatggttgccaacaaaaatgtgattttattaaacga |
100 |
Q |
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| T |
34264391 |
tctcatttattttgacactaatttagccaaacatcgcaggatacggctcttcattttaggaaactatggttgccaacaaaaatgtgattttattaaacga |
34264490 |
T |
|
| Q |
101 |
aatacagttatgagtaagacaataattttgtgtggtcaccttgccagcagagatttttccaatttccatgactattcattcaactaattcactatctgac |
200 |
Q |
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| T |
34264491 |
aatacagttatgagtaagacaataattttgtgtggtcaccttgccagcagagatttttccaatttccatgactattcattcaactaattcactatctgac |
34264590 |
T |
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| Q |
201 |
attttcattccaaaacaagtagcattggttaatttgctatttcccccggcccaaactatacacgtgatgcaagaacatttcattttccaccaaattaata |
300 |
Q |
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| T |
34264591 |
attttcattccaaaacaagtagcattggttaatttgctatttcccccggcccaaactatacacgtgatgcaagaacatttcattttccaccaaattaata |
34264690 |
T |
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| Q |
301 |
gtgctatttgttgtgggcatgtggccctatg |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34264691 |
gtgctatttgttgtgggcatgtggccctatg |
34264721 |
T |
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