View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_high_19 (Length: 316)
Name: NF12049_high_19
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 4243870 - 4244173
Alignment:
| Q |
1 |
aatctctacaggagcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatc |
100 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243870 |
aatctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatc |
4243969 |
T |
|
| Q |
101 |
ttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243970 |
ttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgag |
4244069 |
T |
|
| Q |
201 |
acaatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcataccaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4244070 |
acaatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctgccaccatcataccaacc |
4244169 |
T |
|
| Q |
301 |
ttct |
304 |
Q |
| |
|
|||| |
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|
| T |
4244170 |
ttct |
4244173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 6186927 - 6187229
Alignment:
| Q |
2 |
atctctacaggagcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatct |
101 |
Q |
| |
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||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
6186927 |
atctctacatgatcactctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatct |
6187026 |
T |
|
| Q |
102 |
tcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgaga |
201 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| ||||||||| | | || ||||| |||||||||||||||||||| |||||||| |||||||| |
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| T |
6187027 |
tcaaacaaacaacatcaccaacaacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgaga |
6187126 |
T |
|
| Q |
202 |
caatttatcaaattgtttgttttgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaaaaatgctaccaccatcataccaacct |
301 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6187127 |
caatttatcaaattgtttgttttgtttgaagttgcttattgatgacatcgaaataacgatgaaaacagctaggaaaatgctaccaccatcataccaacct |
6187226 |
T |
|
| Q |
302 |
tct |
304 |
Q |
| |
|
||| |
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|
| T |
6187227 |
tct |
6187229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 6169980 - 6170129
Alignment:
| Q |
1 |
aatctctacaggagcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatc |
100 |
Q |
| |
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|||||||||| || | ||| ||| ||||||||| |||||||||||||||| |||| |||||| | ||| ||||||| ||||||||||||||| |
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| T |
6169980 |
aatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataatccatttatcaatacttgatcaccaata |
6170079 |
T |
|
| Q |
101 |
ttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttg |
150 |
Q |
| |
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|||||| |||||||||||||||||||||| || || || |||| |||||| |
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| T |
6170080 |
ttcaaaaaaacaacatcaccaacaacaatctcaaagatcgatatcttttg |
6170129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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