View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12049_high_2 (Length: 568)
Name: NF12049_high_2
Description: NF12049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12049_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Original strand, 50094501 - 50095066
Alignment:
| Q |
17 |
aagaaggatctgtcatctaacttctaaggcttctgcttctacttctaagaagaaatcaaaagatgcagatgaagacgtgaag---------------aag |
101 |
Q |
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| T |
50094501 |
aagaaggatctgtcttctaacttctaaggcttctgcttctacttctaagaagaaatcaaaagatgcagatgaagacgtgaagaagaaaaaacagaagaag |
50094600 |
T |
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| Q |
102 |
aaaagggatccaaatgctcccaaaagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgttttacataccggtggtgt |
201 |
Q |
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| T |
50094601 |
aaaagggatccaaatgctcccaagagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgttttacataccggtggcgt |
50094700 |
T |
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| Q |
202 |
ggaaatgatcacttttcttctgtaaaattgtctaaaactgttgatggaatgaatttcaaacactgctttttcttaatgacggaatctaaagaaaactaat |
301 |
Q |
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| T |
50094701 |
ggaaatgatcacttttcttctataaaattgtctaaaactgttgatggaatgaatttcaaacactgctttttcttaatgacagaatctaaagaaaactaat |
50094800 |
T |
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| Q |
302 |
attgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatggctcgttgacagttatttctgttttctttcagcc |
401 |
Q |
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| T |
50094801 |
attgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatggctcgttgacagttatttttgttttctttcagcc |
50094900 |
T |
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| Q |
402 |
aggtccatttgcacctaatgtcatttgtgattactgtattgaatgtacagctgagtaaaaggagtcatacaaggcaaaaacccgtgtttgatagaaaaat |
501 |
Q |
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| T |
50094901 |
aggtccatttgcacctaatgtcatttgtgattactgtattgaatgtacagctgagtaaaatgagtcatacaaggcaaaaacccgtg-ttgatagaaaaat |
50094999 |
T |
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| Q |
502 |
attatttagatgaaattagtggctacactaattcacaagtgtgttgaaatttagggcctaactcatc |
568 |
Q |
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| T |
50095000 |
attatctagatgaaattagtggctactctaattcacaagtgtgttgaaatttagggtctaactcatc |
50095066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 268 - 375
Target Start/End: Original strand, 7073822 - 7073929
Alignment:
| Q |
268 |
tttttcttaatgacggaatctaaagaaaactaatattgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatg |
367 |
Q |
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| T |
7073822 |
ttttttttaatgacagaatctaaagaaaactaatcctggaatttcatttacggacgtgggaagagtacttggagaaaaatggaaaaatctgtcaggtatg |
7073921 |
T |
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| Q |
368 |
gctcgttg |
375 |
Q |
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| T |
7073922 |
gctggttg |
7073929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 88
Target Start/End: Original strand, 7073617 - 7073651
Alignment:
| Q |
54 |
tctacttctaagaagaaatcaaaagatgcagatga |
88 |
Q |
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| T |
7073617 |
tctacttctaagaagaaatcaaaagatgctgatga |
7073651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 7073676 - 7073773
Alignment:
| Q |
95 |
gaagaagaaaagggatccaaatgctcccaaaagtgtgttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgttttacatac |
192 |
Q |
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| T |
7073676 |
gaagaagaaaaaggatccaaatgcacctaagagggcactgtctggtttcatgttcttttctcagatggaaagagaggtttgttttatgctgtacatac |
7073773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 35497970 - 35497817
Alignment:
| Q |
46 |
cttctgcttctacttctaagaagaaatcaaaagatgcagatgaagacgt---------------gaagaagaaaagggatccaaatgctcccaaaagtgt |
130 |
Q |
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| T |
35497970 |
cttctacttctacttctaagaagaaatcaaaagatgcagatgaagatggcaaaaagaaaaaacagaagaagaaaaaggatccaaatgcacccaagagggg |
35497871 |
T |
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| Q |
131 |
gttgtctggattcaagttattttctcgaaaggaaagagaggtgtgttttatgtt |
184 |
Q |
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| T |
35497870 |
aatgtctggattcatgttcttttctcaaatggaaagagaggtgtgttttatgtt |
35497817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 386
Target Start/End: Complemental strand, 35497709 - 35497592
Alignment:
| Q |
269 |
ttttcttaatgacggaatctaaagaaaactaatattgggatttcatttacggatgtggtaagagtaattggagagaaatggaaaaagatgtcagatatgg |
368 |
Q |
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| T |
35497709 |
tttttttaacgacagaatataaagaaagctaatcctgggatttcatttacggatgtggcaaagttacttggagaaaactggaaaaaaatgtcaggtatgg |
35497610 |
T |
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| Q |
369 |
ctcgttgacagttatttc |
386 |
Q |
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| T |
35497609 |
ctgtttgacagttgtttc |
35497592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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